Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015-
11-03] 4,851 sequences; 27,454,949 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq3060 123 2e-23
seq4836 107 2e-18
seq2521 87.8 2e-12
>seq3060
Length=205498
Score = 123 bits (136), Expect = 2e-23
Identities = 167/231 (72%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
|||| |||||||| | | || | || | |||||||||||| ||||||||||| ||
Sbjct 122882 TACCACCGCGTAAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTC-- 122825
Query 118570 TCATAGTGCGCGTA--TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGG 118627
| |||| | ||| |||||||||||||| || || | || | ||||||||| || ||
Sbjct 122824 TGATAGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGG 122765
Query 118628 AGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTC 118687
|| || |||||||||||| ||| || ||| || | |||| ||||| | |||
Sbjct 122764 TGGAATTCCCTCCTTGTCTTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTC 122705
Query 118688 GACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| || | || | ||||| ||||||| || || ||||||||||||||
Sbjct 122704 TACTTCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654
Score = 116 bits (128), Expect = 3e-21
Identities = 151/209 (72%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589
|||||||| | ||||| || || || ||||||||||| | ||| || ||| ||
Sbjct 122342 ACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCA 122283
Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649
|||||||| |||||| |||| | || ||||| || ||||| || ||||||||||||
Sbjct 122282 AGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGG 122223
Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709
|| ||| || || | |||| || || | ||| ||||| | ||| | || |||
Sbjct 122222 ATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACCTCAAGGGTGATGGTCTTG 122163
Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738
|| |||| ||| || ||||||||||||||
Sbjct 122162 CCAGTCAAAGTCTTGACAAAAATCTGCAT 122134
Score = 93.3 bits (102), Expect = 4e-14
Identities = 139/196 (71%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590
|||| |||| ||||| || ||||| ||||| ||||| | |||||| |||||| |
Sbjct 122633 CAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTGCGACCATCCTCAA 122574
Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650
| ||||| |||||| | || | || |||||||| ||||| ||||||||||| || ||
Sbjct 122573 GTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCCTCCTTATCCTGAA 122514
Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710
| || ||| || | |||| ||| || | | || ||||||| || | || || |
Sbjct 122513 TCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGAGTGATAGTCTTTC 122454
Query 118711 CGGTCAGAGTTTTTAC 118726
| || ||||| || ||
Sbjct 122453 CCGTGAGAGTCTTGAC 122438
>seq4836
Length=199183
Score = 107 bits (118), Expect = 2e-18
Identities = 131/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 118551 TTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATG 118610
||||| || ||||||||||||| ||| || ||||||||||| ||||||||| | ||
Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAATC 162888
Query 118611 AGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCG 118670
| ||||||||| || ||||| ||||| |||||||| ||||| || || | |||
Sbjct 162887 AAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGTCG 162828
Query 118671 ACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAA 118729
| ||||| || ||| || || | ||| | || |||||||| || || || || ||
Sbjct 162827 ATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 162769
>seq2521
Length=135005
Score = 87.8 bits (96), Expect = 2e-12
Identities = 83/106 (78%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601
|| |||||||| || |||||||| || | || || |||||||||||| || ||
Sbjct 57602 GTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 57661
Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647
||| |||||||||| ||||| || ||||| ||||| ||||||||||
Sbjct 57662 GCGAAGATGAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTCTG 57707
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433804751268892
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |