Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3934 197 1e-45 seq2228 131 1e-25 seq3060 98.7 9e-16 seq4836 89.7 5e-13 >seq3934 Length=413549 Score = 197 bits (218), Expect = 1e-45 Identities = 429/641 (67%), Gaps = 6/641 (1%) Strand=Plus/Plus Query 23339 TTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCG 23398 || ||||| || |||| || ||||| || |||| ||||| ||| || || ||||| Sbjct 408817 TTCTCAACCCGCTTCATGAACAGATCGGGGGTCCAAAGAGCAAGGAAGAGATCACGGGCT 408876 Query 23399 CGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGC 23458 | || ||||| || ||| ||| || | ||| ||||| || || | || | ||| Sbjct 408877 CTTACTTCCTCCTTTCCGTGGTTTTTACGGAGATCTAAAAACTCGAAGATATCGGAGTGC 408936 Query 23459 CACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAA 23518 || || || || |||| |||||| ||||| || | || ||||| || || ||||| || Sbjct 408937 CAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCACCTTGGTCGACATAT 408996 Query 23519 CGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACG 23578 || || || ||||| | || | ||||| || |||| ||||| || | |||| | Sbjct 408997 CGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTAGAGGAGCCGTTTGTT 409056 Query 23579 CCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCC 23638 || || | || || | || |||| || | | | ||| || || || | Sbjct 409057 CCTGCAATGTAGGAGCCAGTCGCGCGAATACGATGGATATTAAGACCGATACCGCCAGCT 409116 Query 23639 GATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCT 23698 | || || |||| ||||| || ||||| |||||||| || |||||||| || || Sbjct 409117 GTCTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGATACCATCGATGCTATCTTCC 409176 Query 23699 TTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGT 23758 || | | | | ||||| || | ||| || | || || || | || ||| || Sbjct 409177 TTCATATCAATGAGAAAACAGGAGGCCATCTGTGGTTGCGGTGTTCCCGCGTTGAAAAGA 409236 Query 23759 GTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCA 23818 || ||| || || ||||| ||| | ||||| ||||| ||||| ||||| || Sbjct 409237 GTGGGGGAAGCATGTGTAAAATATTTCTGAGACATCAGATTATACGTTTCGATCGCCTTC 409296 Query 23819 TCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTC- 23877 |||||||| || || || || || | || || ||||| ||||||| ||| || | ||| Sbjct 409297 TCAATGTCTTCGCCATGAATGCCAACCGCAACACGCATAATCATGTGTTGCGGACGCTCA 409356 Query 23878 --GACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAA 23935 |||| || || || ||| ||||||||||| | | | ||||| ||||| ||| Sbjct 409357 GCGACCTTG---CCATTGATTCGCAACAGATATGACCTCTCTAAAGTTTTGAATCCGAAA 409413 Query 23936 TAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGAATT 23976 || | |||||| || |||||||| | || ||||||||||| Sbjct 409414 TACTGATAGTTGAAATCACGATCATAAACAATGGCCGAATT 409454 Score = 86.0 bits (94), Expect = 6e-12 Identities = 154/222 (69%), Gaps = 5/222 (2%) Strand=Plus/Plus Query 22454 TTCACCACTTGAAACTCGCCGGACAAGA-CGCGGCGTTGGTAAATGTTGGATGTGAACGG 22512 || || ||||| || ||||| | ||||| | ||||| ||| ||||| |||||| | || Sbjct 407880 TTGACGACTTGGAATTCGCCTG-CAAGAACCCGGCGAGAGTAGATGTTTGATGTGTATGG 407938 Query 22513 TTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAA 22572 || ||| |||| ||| || || |||||| || || || |||||||| || | Sbjct 407939 CTCAAAACATTCGTTGAAACCGAGGATCTGACTCGTGCTGGCAGTAGGCATCGGAGCAAC 407998 Query 22573 CAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCA 22632 |||| ||| | | ||||| |||| || | ||||||| | ||||||||| Sbjct 407999 AAGTAAACTGTTGCGTACACCGTGTTTTGCGATATCCTTCTTGAGGGTGTCCCAGTCCCA 408058 Query 22633 CAGATCGGACGGCGTCACATTGTCCCACATATCGTATTGCAA 22674 || || | ||| ||||| || |||||||||||| ||||| Sbjct 408059 AAGGTCAGTCGGAGTCACGTT---CCACATATCGTACTGCAA 408097 >seq2228 Length=283306 Score = 131 bits (144), Expect = 1e-25 Identities = 361/547 (66%), Gaps = 25/547 (5%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG---CCACGTTCGCCGAG 57971 |||||||| || ||| | || |||||| || | || || |||| |||||| | Sbjct 201401 AAGAAGGCTGATTGGGCCATTCGATGGATCCAA---GACAAGGAATCCACCTTCGCCCAA 201457 Query 57972 AGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATA 58031 | || | || || || ||||| |||||||| ||||| ||| || || | || Sbjct 201458 CGCCTGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATT 201517 Query 58032 TTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCG 58091 || ||| |||||||||| ||||| |||||||| || || ||| || || ||||| || Sbjct 201518 TTCTGGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCC 201577 Query 58092 CGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAA 58151 || |||||||||||||| || || ||||| ||||| | | ||| ||| | | || Sbjct 201578 CGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCCCACCTCCGCCAT--- 201634 Query 58152 CCGACGCGG--GATCG--CATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGA 58207 || | ||| ||| | | || ||| ||||| ||||| || | ||| || || || Sbjct 201635 -CGCCCCGGCCCTTCGGCCGTTGAGGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGA 201693 Query 58208 GTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAA 58267 || | || || || || || ||| | || || |||||| | | |||| | Sbjct 201694 ATTCTTAACTGATGCTCTTCCATGTGCCCTTCTTGGCATGAACGCCAAGCTCATGTGCCA 201753 Query 58268 GTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA----TT 58323 || || |||||||||||||||||||| | | | || |||| | | | | Sbjct 201754 ATATATCGAGTTTGTTGCCGACAGACTGCTTGTTG--CT--TTGGGCAACAAAAAGTTCT 201809 Query 58324 ACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACT 58383 |||| | | || || ||||| |||||| || |||||| | | |||||||| |||| Sbjct 201810 ACAATGCCACCAACCCATTTGACTTTATGGATAACATCTCGTTGGCCGGCAAGACCAACT 201869 Query 58384 TTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG---AGCGGTAACAAGT 58440 | ||||| || ||| | || || || || || |||||| ||| |||||| Sbjct 201870 TCTTCGAGAAGCGGGTTGGTGATTACCAGAAGGCGGGTGTGATGGCTAGCACGAACAAGA 201929 Query 58441 TGGAGGA 58447 |||||| Sbjct 201930 AGGAGGA 201936 >seq3060 Length=205498 Score = 98.7 bits (108), Expect = 9e-16 Identities = 145/203 (71%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 31203 TCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCG 31262 |||| |||||||| || || || || ||||| |||| |||||| | ||||| | ||| Sbjct 122436 TCGTCAAGACTCTCACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCG 122495 Query 31263 A-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 | |||| |||| ||| | ||| ||||| ||| | || || || ||||| || | Sbjct 122496 ATAACGTGAAAACCAAGATTCA-GGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTG 122554 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAA 31381 || |||||||||||||| | || || | ||| | ||||||||||| ||||| Sbjct 122555 ATTTTCGCTGGCAAACAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAG 122614 Query 31382 GAATCGACTCTTCATCTGGTACT 31404 ||||| ||||| ||||| || || Sbjct 122615 GAATCTACTCTCCATCTTGTCCT 122637 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| | || ||||| || || || | || || || |||| Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941 Query 31253 GACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| |||| | | || || ||| || || ||||| | || |||||||| Sbjct 122942 GACACGATCGACAACGTTAAGAC-GAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 123000 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||| || || || ||||| || ||| | || || | ||| | ||||||||| Sbjct 123001 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAA 123060 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || ||| ||||| ||| ||||| | ||| || | ||||| Sbjct 123061 CATCCAGAAGGAAAGCACTCTGCATTTGGTATTGAGATTGCGCGGCGG 123108 Score = 89.7 bits (98), Expect = 5e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| |||| || ||||| ||||| | || || || | || Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | |||||| | || |||||||| || | || || |||||| Sbjct 122714 GACACAATCGACAACGTCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 122773 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGAC--TCTATGACTATGAGCGATTATA 31370 |||||| | || || || ||||||||| | || ||| || |||| | || || | Sbjct 122774 CAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCA--GACTACA 122831 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||||| ||||| || || || ||||| || ||| Sbjct 122832 ACATTCAGAAAGAGTCTACACTGCATCTCGTCCTT 122866 >seq4836 Length=199183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| || || ||||| || |||||| | || || || | ||||| || Sbjct 162769 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAAGTGGAGTCCAGCGACACGATC 162828 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | || || | ||| ||||||||||||| | || || |||||||||||| | Sbjct 162829 GACAATGTGAAGAGCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTG 162888 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAA 31380 || |||||||| || ||| | || ||| ||| |||||||||| || || ||||| Sbjct 162889 ATTTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACTTTGAGCGATTACAATATCCAAAA 162947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445739369839920