Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3934 215 6e-51 seq2228 122 1e-22 >seq3934 Length=413549 Score = 215 bits (238), Expect = 6e-51 Identities = 566/856 (66%), Gaps = 16/856 (2%) Strand=Plus/Plus Query 63234 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63293 ||||| | ||| | ||| || |||| | || || || ||||| || ||||| || || Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849 Query 63294 CAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA--- 63350 |||||||| | || ||||| | | ||| |||||| ||||| | |||||| Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGG 408906 Query 63351 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63410 ||||| | ||| | | ||||| || ||||| ||||| | || ||||| | | ||| Sbjct 408907 AGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCA 408966 Query 63411 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63470 ||||||||||| || || || || | |||| ||| || || ||| | || | | ||| Sbjct 408967 GGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026 Query 63471 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAATA 63530 || | || ||||| || || || || || | || ||| ||| | || |||||| Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086 Query 63531 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63590 | || ||||| || || || || | || || || | ||||| |||| Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146 Query 63591 GTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63650 || || ||||| || || |||||||| || |||| | || ||||||||| | ||| Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206 Query 63651 TGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63710 || | | | |||||||| || || | || || ||||| || ||||| |||| | | Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGA 409266 Query 63711 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63770 || | ||||| ||||| || || || || || || |||||| || || || Sbjct 409267 GACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCA 409326 Query 63771 ACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAG 63830 |||||||| | |||||| || || | ||| | | ||| || ||| ||||| || Sbjct 409327 ACACGCATAATCATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATAT 409386 Query 63831 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 63888 || | || |||||||| || || ||||| | || ||||| || || || |||| || Sbjct 409387 GACCTCTCTAAAGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAA 409444 Query 63889 TAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCAT-GGTAATACTTGAAATA 63947 | ||||||| || | || || || |||| || ||| | ||| | ||||| Sbjct 409445 TGGCCGAATTAAGTTCCTCGGCATGCTTCATAACAAT-TCCGTAGGTTTTTTGAGAAATC 409503 Query 63948 ATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCACTT 64005 || || | | || |||||| || |||| |||| ||||| || || || || Sbjct 409504 ATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAGT--GATAAAGGTCGTCAATGACCG 409561 Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 | || ||||||| || | ||||||||| || || | |||||||||||| || || | Sbjct 409562 AAGAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGA 409621 Query 64066 TGGCATAATCCGGATG 64081 | ||||| || || || Sbjct 409622 TAGCATAGTCTGGGTG 409637 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 62046 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62105 |||||||| |||||||| || || | | ||||| ||||||||||| || || || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 62106 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62165 || | ||||||| ||||||||| || || | |||| | || ||| | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 62166 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62225 ||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | ||| Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 62226 ATCGTCTTTTGTGCAATTTCCCA 62248 || ||| |||| | |||||||| Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743 >seq2228 Length=283306 Score = 122 bits (134), Expect = 1e-22 Identities = 298/452 (66%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 || ||| || ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAA 33394 |||| || || || ||||| || ||||| || ||||| ||||||| | ||||| Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797 Query 33395 TCCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACA 33454 ||||| || || || ||| || || || || || |||||| ||| | | Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737 Query 33455 ATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATAC 33514 ||||| || | || | ||||||||| |||| | ||||| | ||||| || Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677 Query 33515 CGCATTTGTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAA 33574 || | ||| || || ||||| | || |||| | || || Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617 Query 33575 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAA 33634 | | || || || ||| ||| ||||||||||| | ||| ||||| || ||||| Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557 Query 33635 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGA 33694 ||||| |||||||| |||||||| || || | ||| || || |||||||| || || Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497 Query 33695 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 |||||||| ||||| || || |||||||||| Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAA 201465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629779409435280