Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3934 201 1e-46 seq2228 104 3e-17 >seq3934 Length=413549 Score = 201 bits (222), Expect = 1e-46 Identities = 563/856 (66%), Gaps = 16/856 (2%) Strand=Plus/Plus Query 66027 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 66086 ||||| | ||| | ||| || |||| | || || || ||||| || ||||| || || Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849 Query 66087 CAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA--- 66143 |||||||| | || | ||| | || ||| |||||| ||||| | |||||| Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGG 408906 Query 66144 AGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 66203 ||||| | ||| | | ||||| | ||||| ||||| | || ||||| | | ||| Sbjct 408907 AGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCA 408966 Query 66204 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 66263 ||||||||||| || || || || | |||| ||| || || ||| | || | | ||| Sbjct 408967 GGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026 Query 66264 GGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATA 66323 || | || || || || | || || || || | || ||| ||| | || |||||| Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086 Query 66324 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 66383 | || ||||| || || || || | || || || | ||||| |||| Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146 Query 66384 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 66443 ||||| ||||| || || || ||||| ||| |||| | || ||||||||| | ||| Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206 Query 66444 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 66503 || | | |||||||| || || | || || ||||| || ||||| |||| | | Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGA 409266 Query 66504 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 66563 || | ||||| ||||| || || || || || || |||||| || || || Sbjct 409267 GACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCA 409326 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 66623 |||||||| | |||||| || || | ||| ||| |||| || ||| ||||| || Sbjct 409327 ACACGCATAATCATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATAT 409386 Query 66624 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 66681 || | || |||||||| || || ||||| | || ||||| || || || |||| || Sbjct 409387 GACCTCTCTAAAGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAA 409444 Query 66682 TAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAAATA 66740 | |||| || |||| || || || |||| | ||| | ||| | ||||| Sbjct 409445 TGGCCGAATTAAGTTCCTCGGCATGCTTCATAAC-AATTCCGTAGGTTTTTTGAGAAATC 409503 Query 66741 ATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA--TCCTCCATCACTT 66798 || || | | || |||||| || || | |||| ||||| || || || || Sbjct 409504 ATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAGT--GATAAAGGTCGTCAATGACCG 409561 Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 | || ||||||| || | |||||||| || || ||||||||||| || || | | Sbjct 409562 AAGAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGA 409621 Query 66859 TGGCATAATCCGGATG 66874 | ||||| || || || Sbjct 409622 TAGCATAGTCTGGGTG 409637 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 64839 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 64898 |||||||| |||||||| || || | | ||||| ||||||||||| || || || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 64899 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 64958 || | ||||||| ||||||||| || || | |||| | || ||| | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 64959 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 65018 ||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | ||| Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 65019 ATCGTCTTTTGTGGAATTTCCCA 65041 || ||| |||| | |||||||| Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743 >seq2228 Length=283306 Score = 104 bits (114), Expect = 3e-17 Identities = 294/452 (65%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 35851 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 35910 || ||| || ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857 Query 35911 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAA 35970 | || || || || ||||| || || ||||| ||| | |||| || | ||||| Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797 Query 35971 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 36030 ||||| || || || ||| || || ||||| || |||||| ||| | | Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737 Query 36031 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 36090 ||||| || | ||| | ||||||||| |||| | ||||| | ||||| || Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677 Query 36091 CGCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 36150 || ||||| || || | || | | || ||| | || || Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617 Query 36151 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 36210 | | || || || ||| ||| ||||||||||| | ||| ||||| || ||||| Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557 Query 36211 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 36270 ||||| |||||||| |||||||| || || | ||| || || || || || || ||| Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497 Query 36271 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 ||||| || ||||| || || |||||||||| Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAA 201465 Score = 84.2 bits (92), Expect = 3e-11 Identities = 197/295 (67%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 36419 TCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGG 36476 || || | |||||||||||| | ||||| || | || || || ||||| || || Sbjct 201279 TCCTTGATATATGTATCAATGAGCAAAGA--GTAGGTCTCGGAGTGGATGTTCTCCATCA 201222 Query 36477 CCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 36536 || || || |||||||| || | ||||| | |||||| ||||| | ||| || | Sbjct 201221 TGATCTGGAAACCGTAGAAGCAACGGGCCTCTGGAATCTGAACTTCGCCGCTAAAGCGCT 201162 Query 36537 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 36596 | | |||||| || || || ||||| || ||||| || ||||| ||||| | Sbjct 201161 CAAGAAGATTTTCGTTGACGATGCCGTCGGAAGCGGCAAAGAAGGCCAACACATGAGAGA 201102 Query 36597 TAAAATA---TTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 36653 | || || || |||| | | | | |||||| || | | ||||| || | || Sbjct 201101 TGAAGTAGCGTTCATCGTCATTTAGTCGATCATTCCAGTCGTGAAGGTCTTTGGACAAAT 201042 Query 36654 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 36708 | | ||||| | ||||| || || ||||| ||||| || ||||| | |||||| Sbjct 201041 CGATCTCTTCGGCGGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 200987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658132890046840