Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq2228 104 2e-17 seq4836 102 8e-17 seq3060 95.1 1e-14 >seq2228 Length=283306 Score = 104 bits (114), Expect = 2e-17 Identities = 164/229 (72%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 52836 AGAGGCCGTCGACATTGAAAAAGAGTTTTTTACGGACGCTTTACCC-GTATCATTGTTGG 52894 |||||| || || ||||| || || || || || || ||| | || || | || |||| Sbjct 201670 AGAGGCAGTTGAGATTGAGAAGGAATTCTTAACTGATGCTCTTCCATGTGCCCTTCTTGG 201729 Query 52895 GCATGAACGCGACCATGATGTGCGAGTACATCGAGTTTGTTGCGGACAGACTG-TTGATG 52953 ||||||||| | | |||||| | || |||||||||||||| ||||||||| ||| || Sbjct 201730 -CATGAACGCCAAGCTCATGTGCCAATATATCGAGTTTGTTGCCGACAGACTGCTTGTTG 201788 Query 52954 CAGCTCGGTCAGCCGAAA-TACTATAATGCGCGTAACCCCTTTTCGTTTATGAACAACAT 53012 | | || || | ||| | ||| ||||| ||||| ||| |||||| | ||||| Sbjct 201789 C--TTTGGGCAACAAAAAGTTCTACAATGCCACCAACCCATTTGACTTTATGGATAACAT 201846 Query 53013 ATCGCTCGAGGGCAAAACAAACTTTTTCGAGAGACGTGTGGGCGAGTAC 53061 ||| | | ||||| || ||||| ||||||| || || || || ||| Sbjct 201847 CTCGTTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGATTAC 201895 >seq4836 Length=199183 Score = 102 bits (112), Expect = 8e-17 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 139577 TTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATC 139636 ||||| || || |||||||||| || | ||| |||||||| || ||||| | ||| Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAATC 162888 Query 139637 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCC 139696 | ||| ||||| || ||||| |||||||| ||||| |||||| || | | || Sbjct 162887 AAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGTCG 162828 Query 139697 ACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAA 139755 | |||||| ||| |||||| |||| ||| | ||||||||||| | || || ||||| Sbjct 162827 ATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 162769 >seq3060 Length=205498 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| ||||| || || || ||||| ||||| | || | ||||| Sbjct 122343 AACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTC 122284 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 |||||||||||||| |||||| |||||||| || ||||| || || || ||||| Sbjct 122283 AAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTG 122224 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| ||| || | | || | || || || ||| ||||||| ||| | ||||| Sbjct 122223 GATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACCTCAAGGGTGATGGTCTT 122164 Query 139735 GCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||| ||||| || || || || || ||||| Sbjct 122163 GCCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/201 (72%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGA--GTCTTCGAGCTGTTTAC 139625 ||||||||||| |||||||| || || | || | | ||| ||| ||||||||||| | Sbjct 122850 GTAGACTCTTTCTGAATGTTGTAGTC--TGATAGCGTGCGACCGTCCTCGAGCTGTTTGC 122793 Query 139626 CAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTT 139685 | ||| | |||| ||| ||||| || || || || || || ||||| ||| | || ||| Sbjct 122792 CGGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTC-TTGAATCTTAGTT 122734 Query 139686 TT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAAC 139744 || | | || | |||||| | | ||| || |||| || | || || |||||||| Sbjct 122733 TTGACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTTTTTCCGGTCAAG 122674 Query 139745 GTTTTTACGAATATTTGCATA 139765 || || || || || |||||| Sbjct 122673 GTCTTCACAAAAATCTGCATA 122653 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| || || | ||| || || || | || || || || |||||||||||| Sbjct 123109 GCCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGA 123050 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | ||| | || || ||||| || |||||| |||| || || || || ||||| || Sbjct 123049 GAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGG 122990 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCA 139715 || |||||||| || ||| |||| || ||| | | || | ||||| | | ||| | Sbjct 122989 GATACCTTCTTTATC-TTGAATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGACTCGA 122931 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | ||||||||||| || || || || || ||||||||| Sbjct 122930 CCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCATA 122881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496033919919200