Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2228 129 8e-25 seq3934 116 5e-21 >seq2228 Length=283306 Score = 129 bits (142), Expect = 8e-25 Identities = 302/456 (66%), Gaps = 0/456 (0%) Strand=Plus/Minus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 || ||| || ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 49772 |||| || || || ||||| || ||||| || ||||| |||| || | ||||| Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797 Query 49773 TCCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACA 49832 ||||| || || || ||| || || ||||| || |||||| ||| | | Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737 Query 49833 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 49892 ||||| || | ||| | ||||||||| |||| | ||||| | ||||| || Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677 Query 49893 CGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 49952 || ||||| || || | ||||| | || |||| | || || Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617 Query 49953 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 50012 | | || || || ||| ||| ||||||||||| | ||| | ||| || ||||| Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557 Query 50013 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGA 50072 ||||| |||||||| |||||||| || || | ||| || || || || || || ||| Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497 Query 50073 AAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAG 50108 |||||||| ||||| || || ||||||||||| || Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAACCAG 201461 >seq3934 Length=413549 Score = 116 bits (128), Expect = 5e-21 Identities = 699/1114 (63%), Gaps = 25/1114 (2%) Strand=Plus/Plus Query 78718 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 78777 |||||||| |||||||| || || | | ||||| ||||||||||| || || || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 78778 CCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 78837 || | ||||||| |||||||| || || | |||| | || ||| | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 78838 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 78897 ||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | ||| Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 78898 ATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAAGG 78957 || ||| |||| | |||||||| | || || || | || || ||| | || | Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCACACTGTCTTGTAGAGAGCTTTGATGTCTGCAGGGATA 407780 Query 78958 TTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTC 79014 || | | ||||| | || || || || || ||||| | ||||| || | || | Sbjct 407781 TTGGGGATGTTCTGGACTGAACCGCCGTCAGCAATAATGCGGTTCTTCATGTTGTCTGAC 407840 Query 79015 CATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCA 79074 || | || | | | | || || ||||| || ||||| ||||| || Sbjct 407841 CAGAGGCCGAGATCAACAAGATCCTTGAGAAGCCATGGATTGACGACTTGGAATTCGCCT 407900 Query 79075 GACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCC 79134 | | || | |||| ||| || || || ||||| || | |||| || || Sbjct 407901 GCAAGAACCCGGCGAGAGTAGATGTTTGATGTGTATGGCTCAAAACATTCGTTGAAACCG 407960 Query 79135 AAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACCG 79194 | || ||| || || || ||||| || || || | |||||| || | | |||| Sbjct 407961 AGGATCTGACTCGTGCTGGCAGTAGGCATCGGAGCAACAAGTAAACTGTTGCGTACACCG 408020 Query 79195 TATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGACGGGACAACATTC 79254 | | | ||| | | || || | ||||| |||||||| |||| ||| || ||| Sbjct 408021 TGTTTTGCGATATCCTTCTTGAGGGTGTCCCAGTCCCAAAGGTCAGTCGGAGTCACGTTC 408080 Query 79255 CAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTATGTTTCATAAGGT 79314 || | ||| || || | | |||| || | || || ||| || ||||||||||| Sbjct 408081 CACATATCGTACTGCAAAGTACCCTTTGAAACGGGAGAACCTTCATAAGTTTCATAAGGA 408140 Query 79315 CCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCTCCGTAATAAATGGTTTCGAAA 79374 || || | ||||| |||||| ||| | ||| | | || || |||||||| Sbjct 408141 CCATCAACCTTGGCTATGTCACAAGACGCGGTCAGAGCTGCATGGTAGATTGTTTCGAAG 408200 Query 79375 ATCTTCTTATTGAGATCTTGTGCTTCTAGGCTA-TCAAATGGATAATTTAAGAG-AATAA 79432 || | |||| | | | ||| || |||| | ||||| || ||| || | || | Sbjct 408201 ATTTGAATATTCAACTGCTTTGCCTC-AGGCGAGTCAAACGG-CAATCGCAGCGCAAGGA 408258 Query 79433 ACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAAATTT 79492 | || || || | ||| || ||||| | | ||||| | ||| | ||| | Sbjct 408259 AAGCATCAGCGAGTCCCTGCACACCCACCGCAATAGGACGATGACGGAAGTTACTCTTCC 408318 Query 79493 CAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATTCCTGACTATTA 79552 |||||||| | ||||| | ||| | || || || || || | || || | | Sbjct 408319 TGGCTTCTGGGACGGGATAGTGATTGTTGTCAATGATCTTGTTTAAGTTGAGAACAAGGA 408378 Query 79553 CTT---TGACCACATCCTTTAGTTTGAGAAAATCA-AATCGTCC--------ATCTATTA 79600 ||| |||| ||| | | | | ||| ||| | ||| || ||| | Sbjct 408379 CTTGTGTGACTTCATGC---AATCTCCCAAAGTCATACTCGCCCCGGACAGGATC---GA 408432 Query 79601 CAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCAT 79660 || | || ||| || | || |||| ||| ||||| || || || | | | | | Sbjct 408433 CATATGTGGGCAAAGCAAGGGACGCCAAATTGCAAACTGCGACTTCGTCCGGCGCGGTGT 408492 Query 79661 ATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTAC 79720 | | || ||||| ||||| | ||| | | ||| ||||| | |||| ||| |||| Sbjct 408493 ACTCGATGATTTCCGTGCACAAGTTGGAGCTCCGAATAGTTCCAAGGTTTTTTTGGTTAC 408552 Query 79721 TCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATT 79780 |||| ||| |||||||| |||||||| ||||| || | ||||| || | |||| | Sbjct 408553 TCTTGCGGTTGCACGCATCTTTATAAAGCATGAAGGGGTTCCCAGTCTCTGTTTGAGCCT 408612 Query 79781 CTATAATCGCTTTCCAGACGACTCGAGCCTTTAT 79814 | | ||| || | ||| | | ||||||| || Sbjct 408613 CCAAAATAGCATACCAAAGTTTTTGAGCCTTGAT 408646 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718225245975640