Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3060 105 5e-18 >seq3060 Length=205498 Score = 105 bits (116), Expect = 5e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 42879 GTCGCCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATC 42938 || ||| || |||| ||| || |||||||| | |||||| ||||| || | || ||||| Sbjct 123112 GTTGCCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATC 123053 Query 42939 GGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGC 42998 ||| | ||| || | || || | || || || ||||| || | ||||||||| |||| Sbjct 123052 GGAGAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGG 122993 Query 42999 CGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTC 43058 || | ||||||||| || || | || || || | | ||||| | ||| Sbjct 122992 TGGGATACCTTCTTTATCTTGAATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGACTC 122933 Query 43059 GACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||| || | || ||||| || ||||||| || || |||||||||||||| Sbjct 122932 GACCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||||| || || | || || |||| || | |||||||||||||| Sbjct 122845 CTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAA 122786 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCT 43037 |||||| ||||| || || | || | || || || || ||| |||||| | Sbjct 122785 AATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTAGTTTTGACGTT 122726 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 | | | |||||| || ||| || || | ||| || ||||||||||| | || ||||| Sbjct 122725 GTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCAC 122666 Query 43098 AAAAATTTGCAT 43109 |||||| ||||| Sbjct 122665 AAAAATCTGCAT 122654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381347052833358