Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3934 233 3e-56 >seq3934 Length=413549 Score = 233 bits (258), Expect = 3e-56 Identities = 587/880 (67%), Gaps = 24/880 (3%) Strand=Plus/Plus Query 71969 CTAATCCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTT 72028 ||||||| | ||| || ||||| | ||| | ||| || || | | | || || | Sbjct 408770 CTAATCCTGACGCTTCGTTTGGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCT 408829 Query 72029 TCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGT 72088 |||| || ||||| || |||||||||| | || ||||| | || ||| ||||| | Sbjct 408830 TCATGAACAGATCGGGGGTCCAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCT 408889 Query 72089 TTCCTGTATTCTTTTTA---AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCA 72145 |||| | |||||| ||||| | ||| | | ||||| || ||||| ||||| | Sbjct 408890 TTCCG---TGGTTTTTACGGAGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAA 408946 Query 72146 AGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGT 72205 || ||||| | | || ||||||||||| || || || || | |||| ||| || | Sbjct 408947 GATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTAT 409006 Query 72206 TATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATAT 72265 | ||| | || | | ||| || | || || || || | || || || || | || | Sbjct 409007 TGTTAAAGACACGGAGCATGGGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGT 409066 Query 72266 AGCTTCCACTGGCACGAATA--TTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGA 72323 || ||| | || |||||| || ||| ||||| || || || || | || || Sbjct 409067 AGGAGCCAGTCGCGCGAATACGATGGATATT--AAGACCGATACCGCCAGCTGTCTTGGA 409124 Query 72324 GATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTT 72383 || | ||||| |||| ||||| ||||| || || || ||||| ||| |||| | Sbjct 409125 AATCAGAGCGCAGGTCTTTAGAGTATCGTAGATACCATCGATGCTATCTTCCTTCATATC 409184 Query 72384 AAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGA 72443 || ||||||||| | ||| || | | |||||||| || || | || || || Sbjct 409185 AATGAGAAAACAGGAGGCCATCTGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGA 409244 Query 72444 AGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATC 72503 ||| || ||||| |||| | ||||| ||||| ||||| || || || |||| || Sbjct 409245 AGCATGTGTAAAATATTTCTGAGACATCAGATTATACGTTTCGATCGC--CTTCTCAATG 409302 Query 72504 CCATTG--ATGTATTCCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCAACGATC 72561 | | | ||| || || ||||| |||||||| | ||| || || || | ||| ||| | Sbjct 409303 TCTTCGCCATGAATGCCAACCGCAACACGCATAATCATGTGTTGCGGACGCTCAGCGACC 409362 Query 72562 TTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA- 72620 ||| ||| ||| ||||| || || | || |||||||| || || ||||| | || Sbjct 409363 TTGCCATTGATTCGCAACAGATATGACCTCTCTAAAGTTTTGAATCCGAAATACTGATAG 409422 Query 72621 -TGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTTATCCTTATATTTGTTAACTA 72679 ||||| || || || |||| ||| ||||||| |||| || || || |||| | Sbjct 409423 TTGAAA--TCACGATCATAAACAATGGCCGAATTAAGTTCCTCGGCATGCTTCATAACAA 409480 Query 72680 TATCCAT-GGTGATACTTGAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACATAG 72738 | ||| | ||| | ||||| || || | | || |||||| || |||| ||| Sbjct 409481 T-TCCGTAGGTTTTTTGAGAAATCATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAG 409539 Query 72739 TTGAATAAA--TCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTG 72796 | ||||| || || || || | || ||||||| || | ||||||||| || | Sbjct 409540 T--GATAAAGGTCGTCAATGACCGAAGAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGG 409597 Query 72797 ATACGGCTATTCTGGCGGCTAGAATGGCATAATCTGGATG 72836 | |||||||||||||| || || || ||||| ||||| || Sbjct 409598 ACACGGCTATTCTGGCTGCAAGGATAGCATAGTCTGGGTG 409637 Score = 96.9 bits (106), Expect = 5e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 70788 TTCCTTGTCCAATGTAAACTGAATGGGAGAGGATGCGGCTTTCGTACGTAGATAGTACAT 70847 ||||| || | || || || ||||||| || || || | ||||| ||||||||||| Sbjct 407528 TTCCTGATCAACCGTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACAT 407587 Query 70848 GCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA-ATAGC 70906 || || || || || | ||||||| ||||||||| || || | |||| || | Sbjct 407588 CCCAGTCTTCAGGCCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTG- 407646 Query 70907 TAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTG 70966 |||| || | || || || | || ||| |||||||||||| || |||| ||| | Sbjct 407647 TAGGCTCTTTGAGATGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAG 407706 Query 70967 CAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCA 71003 ||||||| | ||||| ||| |||| | |||||||| Sbjct 407707 CAGCCATCTGAATGATGGTCCTTTGGGAGATTTCCCA 407743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671098503796760