Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq2228 111 2e-19 seq4836 89.7 5e-13 seq3060 84.2 2e-11 >seq2228 Length=283306 Score = 111 bits (122), Expect = 2e-19 Identities = 173/241 (72%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 50619 GGACATGTTCAAAGAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCC-G 50677 || ||| ||| ||| || || || || || || || || || || || ||| | || | Sbjct 201658 GGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGAATTCTTAACTGATGCTCTTCCATG 201717 Query 50678 TGGCATTGTTGGGCATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGACA 50737 || | || |||| ||||||||| | | |||||| | || || ||||||||||| |||| Sbjct 201718 TGCCCTTCTTGG-CATGAACGCCAAGCTCATGTGCCAATATATCGAGTTTGTTGCCGACA 201776 Query 50738 GATTG-TTGTTGCAGCTGGGACAACCGAAA-TACTATAATGCACGTAACCCCTTTCCGTT 50795 || || ||||||| | || |||| ||| | ||| ||||| ||||| ||| || Sbjct 201777 GACTGCTTGTTGC--TTTGGGCAACAAAAAGTTCTACAATGCCACCAACCCATTTGACTT 201834 Query 50796 TATGAATAACATATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 |||| ||||||| ||||||| ||||| || ||||| ||||| | || || || || || Sbjct 201835 TATGGATAACATCTCGTTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGATTA 201894 Query 50856 C 50856 | Sbjct 201895 C 201895 >seq4836 Length=199183 Score = 89.7 bits (98), Expect = 5e-13 Identities = 127/179 (71%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 142997 TTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATC 143056 ||||| || ||||||||||||| || | ||| ||||| || || ||||| | ||| Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAATC 162888 Query 143057 AGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCC 143116 | ||| ||||| || ||||| |||||||| ||||| ||||| || | | || Sbjct 162887 AAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGTCG 162828 Query 143117 ACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 | |||||| ||| || ||||||| || | ||||||||||| | || || ||||| Sbjct 162827 ATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 162769 >seq3060 Length=205498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 158/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| || || || | ||| || ||||| | || ||| || || ||||| |||||| Sbjct 123109 GCCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGA 123050 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | ||| | || || || || || |||||| |||| || || || || ||||| || Sbjct 123049 GAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGG 122990 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGT-TCCACCGTGTCCGTGGGTTCTA 143135 || |||||||| || |||||| || ||| | | || | |||||| | | || | Sbjct 122989 GATACCTTCTTTATCTTGAATTTTC-GTCTTAACGTTGTCGATCGTGTCTGACGACTCGA 122931 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 | || | || | ||||||||||| ||||| || || || ||||||||| Sbjct 122930 CCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCATA 122881 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506983655914320