Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_004688.1 Length=110865 Score E Sequences producing significant alignments: (Bits) Value seq2797 109 4e-19 seq1359 82.4 5e-11 >seq2797 Length=1861 Score = 109 bits (120), Expect = 4e-19 Identities = 127/169 (75%), Gaps = 7/169 (4%) Strand=Plus/Plus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||| ||||| || | ||| || || || |||||||| |||||||||| || || || Sbjct 691 CTTGATCAGGCCGGTGATCACGTCGACCGAAGGCCGCTGGGTCGCCAGGATCAGGTGGAT 750 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCGGACAATGTTGGCCTCAACCTCTTTCTTGTA 99512 |||||| || |||||||||||||| | ||| | ||| | || | | |||||| Sbjct 751 GCCGGCGGCGCGCGCCTTCTGCGCCAGGCGAGCGATGAGCTCTTCGATC---TTCTTG-- 805 Query 99513 GCCAC--CCATCATGAGATCAGCGAGTTCATCCACCACTACCACGATGT 99559 |||| ||||||| || || |||||||| || | ||| |||||||||| Sbjct 806 CCCACCACCATCATCAGGTCGGCGAGTTCGTCGATCACCACCACGATGT 854 Score = 82.4 bits (90), Expect = 5e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 99774 GTAGAGCAGCGAAACCAGCATTGAGTTGATGAAGCTGGACTTGCCCGATCCGGTCGCGCC 99833 ||| |||||||| | | ||| | ||||||| | |||||||| |||||||| | ||| Sbjct 1156 GTAAAGCAGCGACAGGATCATCGCGTTGATGCCGACCGACTTGCCGGATCCGGTGGTGCC 1215 Query 99834 AGCCACCAGCAGATGCGGCATCTTAGCCAGGTTCAGGGA-GATGTCCTTGCCCTCGACGT 99892 |||||||||| ||||||||||| |||||| || | | || ||||| ||| || Sbjct 1216 GGCCACCAGCACGTGCGGCATCTTGGCCAGG-TCGGCCACGACAGGATTGCCGACGATGT 1274 Query 99893 CCTTGCCCA 99901 ||||||||| Sbjct 1275 CCTTGCCCA 1283 >seq1359 Length=2077 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 99393 CTTGATGAGGCCCGTCACCACATCCACGGAGGGCCGCTGCGTCGCCAGGACGAGATGAAT 99452 |||||| | ||| || | || || || ||||| ||||||||||||| || ||| || || Sbjct 1841 CTTGATCACGCCGGTGATGACGTCGACCGAGGGGCGCTGCGTCGCCATGATGAGGTGGAT 1900 Query 99453 GCCGGCCGCACGCGCCTTCTGCGCGATGCG 99482 ||| ||||| |||||||| ||||||| ||| Sbjct 1901 GCCCGCCGCGCGCGCCTTTTGCGCGAGGCG 1930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354622232939886