Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3060 136 9e-27 seq2228 102 2e-16 >seq3060 Length=205498 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || |||| || | || || ||||| | |||||||| || || || ||||| ||| Sbjct 122655 ATACCACCTCGGAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCA 122596 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | ||| || || |||||||| ||||| ||||| | | || ||||| ||| Sbjct 122595 GAGAGAGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGA 122536 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || |||||||||||||| | ||| || || || | ||||||| | ||| Sbjct 122535 GGGATGCCCTCCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCA 122476 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 ||||| || || |||||||| || || || || || || Sbjct 122475 ACCTCGAGAGTGATAGTCTTTCCCGTGAGAGTCTTGAC 122438 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||| ||||||||||| || ||||| ||||| || | |||||| Sbjct 122866 AAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGACCGTC 122807 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || ||||| || |||||||| | | ||| || || || || ||||| || || || Sbjct 122806 CTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTC 122747 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 |||||||| | ||| || || || | || || || ||||| || || || || || Sbjct 122746 TTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGT 122687 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || | || || ||||| |||||||| Sbjct 122686 TTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 113 bits (124), Expect = 1e-19 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 104368 TTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAA 104427 ||| ||||| || ||||| || || || || | ||| || || || || ||||||||||| Sbjct 123073 TTCCTTCTGGATGTTATAATCGGAGAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAA 123014 Query 104428 AATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATT 104487 || || | |||||| || || || || ||||||||||| ||||| || | || || || Sbjct 123013 GATGAGTCGCTGTTGGTCGGGTGGGATACCTTCTTTATCTTGAATTTTCGTCTTAACGTT 122954 Query 104488 TTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTAC 104547 || | || || | || ||||| | |||||||||||| || || | ||| || || Sbjct 122953 GTCGATCGTGTCTGACGACTCGACCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAAC 122894 Query 104548 AAATATCTGCAT 104559 ||| || ||||| Sbjct 122893 AAAAATTTGCAT 122882 >seq2228 Length=283306 Score = 102 bits (112), Expect = 2e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 269138 GTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGG 269197 ||||| ||||| || || |||||||| ||||| || ||||| || |||| || ||| Sbjct 201464 GTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATTTTCTGG 201523 Query 269198 TTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGAC 269257 ||||||||| | ||||||||||| || | ||||| || || |||||||| | | ||| Sbjct 201524 TTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCCCGTGAC 201583 Query 269258 GAAGGTTTACACTGCGACTTCGCTTG 269283 || ||| | ||| |||||| || || Sbjct 201584 GAGGGTCTCCACACCGACTTTGCCTG 201609 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151326836631508