Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq1554 104 4e-18 seq505 104 4e-18 >seq1554 Length=80044 Score = 104 bits (114), Expect = 4e-18 Identities = 84/99 (85%), Gaps = 2/99 (2%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| || | ||| |||||| || |||||||| ||||| || ||||| ||||| Sbjct 26431 GCCAAGCGTCACCGAAAGAT-TCTTCGTGACAACATCCAGGGAATAACAAAGCCTGCTAT 26489 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTC 16530 ||||||||| ||||| |||||||| ||||||||| |||| Sbjct 26490 CCGTCGTCTTGCTCGCCGTGGTGGTGTCAAGCGTATCTC 26528 Score = 87.8 bits (96), Expect = 3e-13 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 16536 TGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATG 16595 || ||||||| || | || ||| ||||||| |||||| | ||||| | |||| Sbjct 26593 TGATCTATGAGGAAACCCGAACTGTCTTGAAGACTTTCCTCGAAGGTGTTATTCGCGATG 26652 Query 16596 CTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATG 16655 | || || || |||||||| || | |||||||| || || ||||| ||||||||| Sbjct 26653 CCGTCACATACACTGAGCACGCCAAGAGAAAGACTGTAACATCTCTGGATGTCGTCTATG 26712 Query 16656 CATTGAAACGTCAAGGCCGTAAGATTTA 16683 | ||||||||||||| ||| || |||| Sbjct 26713 CCCTGAAACGTCAAGGACGTGAGTTTTA 26740 >seq505 Length=480567 Score = 104 bits (114), Expect = 4e-18 Identities = 85/101 (84%), Gaps = 2/101 (2%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| ||||||| ||||| | || || |||||||| || ||||||||||| ||||| Sbjct 85569 GCCAAGCGCCATCGCAAGATCT-TGCGTGACAACATCCAGGGTATCACCAAGCCTGCTAT 85511 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTG 16532 || ||||| ||||||||||| || ||||||||| |||||| Sbjct 85510 TCGCCGTCTTGCTCGTCGTGGCGGTGTCAAGCGTATCTCTG 85470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070764696743