Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq3934 233 2e-56 seq2228 131 2e-25 >seq3934 Length=413549 Score = 233 bits (258), Expect = 2e-56 Identities = 570/856 (67%), Gaps = 16/856 (2%) Strand=Plus/Plus Query 63183 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63242 ||||| | ||| | ||| || |||| | || || || ||||| || ||||| || || Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849 Query 63243 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA--- 63299 |||||||| | || ||||| | || ||| |||||| ||||| | |||||| Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGG 408906 Query 63300 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63359 ||||| | ||| | | ||||| || ||||| ||||| | || ||||| | | ||| Sbjct 408907 AGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCA 408966 Query 63360 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63419 ||||||||||| || || || || | |||| ||| || || ||| | || | | ||| Sbjct 408967 GGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026 Query 63420 GGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATA 63479 || | || ||||| || || || || || | || ||| ||| | || |||||| Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086 Query 63480 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63539 | || ||||| || || || || | || || || | ||||| |||| Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146 Query 63540 GTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATT 63599 || || |||||||| || |||||||| || |||| | || ||||||||| | ||| Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206 Query 63600 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCA 63659 || | | |||||||| || || | || || ||||| || ||||| |||| | | Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGA 409266 Query 63660 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63719 || | ||||| ||||| || || || || || || |||||| || || || Sbjct 409267 GACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCA 409326 Query 63720 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63779 |||||||| | |||||| || || | ||| ||| |||| || ||| ||||| || Sbjct 409327 ACACGCATAATCATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATAT 409386 Query 63780 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 63837 || | || |||||||| || || ||||| | || ||||| || || || |||| || Sbjct 409387 GACCTCTCTAAAGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAA 409444 Query 63838 TAACCGAGTTGAGTTTATCCTTATATTTGTTAACTATATCCAT-GGTGATACTTGAAATA 63896 | |||| || |||| || || || |||| || ||| | ||| | ||||| Sbjct 409445 TGGCCGAATTAAGTTCCTCGGCATGCTTCATAACAAT-TCCGTAGGTTTTTTGAGAAATC 409503 Query 63897 ATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAA--TCCTCCATCACTT 63954 || || | | || |||||| || |||| |||| ||||| || || || || Sbjct 409504 ATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAGT--GATAAAGGTCGTCAATGACCG 409561 Query 63955 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAA 64014 | || ||||||| || | ||||||||| || || |||||||||||||| || || | Sbjct 409562 AAGAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGA 409621 Query 64015 TGGCATAATCCGGATG 64030 | ||||| || || || Sbjct 409622 TAGCATAGTCTGGGTG 409637 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 61995 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 62054 |||||||| |||||||| || || | | ||||| ||||||||||| || || || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 62055 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 62114 || | ||||||| ||||||||| || || | |||| | || ||| | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 62115 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATG 62174 ||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | ||| Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 62175 ATCGTCTTTTGTGGAATTTCCCA 62197 || ||| |||| | |||||||| Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743 >seq2228 Length=283306 Score = 131 bits (144), Expect = 2e-25 Identities = 300/452 (66%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 || ||| || ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAA 33116 |||| || || || ||||| || ||||| || ||||| |||| || | ||||| Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797 Query 33117 TCCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACA 33176 ||||| || || || ||| || || || || || |||||| ||| | | Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737 Query 33177 ATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATAC 33236 ||||| || | ||| | ||||||||| |||| | ||||| | ||||| || Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677 Query 33237 CGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAA 33296 || ||||| || || | ||||| | || |||| | || || Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617 Query 33297 CATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAA 33356 | | || || || ||| ||| ||||||||||| | ||| | ||| || ||||| Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557 Query 33357 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGA 33416 ||||| |||||||| |||||||| || || | ||| || || |||||||| || ||| Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497 Query 33417 AAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33448 |||||||| ||||| || || |||||||||| Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAA 201465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622909426039160