Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq3060 100 3e-16 seq2228 93.3 4e-14 >seq3060 Length=205498 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 26793 ACTGGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAA 26852 || ||||| | ||||| |||| | ||||| ||| |||||||| | || ||| Sbjct 122450 ACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCGATAACGTGAAAACC 122509 Query 26853 AAGATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAA 26912 |||||| || || || || || ||||| ||||| ||| | | |||| || |||||| Sbjct 122510 AAGATTCAGGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTGATTTTCGCTGGCAAA 122569 Query 26913 CAACTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCAT 26972 ||||| || |||| | | | || || |||||||| ||||| ||||||||| ||||| Sbjct 122570 CAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAGGAATCTACTCTCCAT 122629 Query 26973 CTGGTCCT 26980 || ||||| Sbjct 122630 CTTGTCCT 122637 >seq2228 Length=283306 Score = 93.3 bits (102), Expect = 4e-14 Identities = 165/234 (71%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 119642 CTTGTACTCGCCCACACGTTTTTCaaaaaaaTTAGTCTTGCCCTCAAGAGATATGTTATT 119701 || ||| || || || || || || || || || |||||||| | | || ||||||| Sbjct 201898 CTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGATGTTATC 201839 Query 119702 CATAAACTCGAAAGGATTTG---CAGTGTTGAAATGCTTGTCGTAGCCCAACTCGAACAA 119758 |||||| || || || || | || ||| ||| ||| | || |||||| | ||||| Sbjct 201838 CATAAAGTCAAATGGGTTGGTGGCATTGTAGAA---CTTTTTGTTGCCCAAAGC-AACAA 201783 Query 119759 -CAGTCGATCTGCCACAAACTCGATGTATTCGCACATG-GATTGCGAATTCATGCCCAAC 119816 ||||| || || ||||||||||| |||| ||||||| | ||| | |||||||| | Sbjct 201782 GCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTG-GCGTTCATGCCAAGA 201724 Query 119817 ATAGCGACCGGTAAAGCATTGGTAAAGAAATCCTTTTCAATGTCGACCGCTTCT 119870 | || || | ||||| || ||||| ||||| ||||| || || || ||| Sbjct 201723 AGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCT 201670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478633375108720