Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3934 120 3e-22 seq4836 111 1e-19 seq3060 98.7 9e-16 seq2521 84.2 2e-11 >seq3934 Length=413549 Score = 120 bits (132), Expect = 3e-22 Identities = 332/498 (67%), Gaps = 17/498 (3%) Strand=Plus/Plus Query 146049 AGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTTG---CCAC 146105 |||| || | |||||| ||||||| ||| | ||| | ||| || |||||| |||| Sbjct 408923 AGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCAC 408982 Query 146106 CCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGCCGCTGG 146165 | ||||| || | || | | ||||||||||| || | |||||| ||| ||| | | Sbjct 408983 CTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTAG 409042 Query 146166 CTACGCCGTTCGTAGAGTTTATTCTGGTGCCGCGGGAGCGCACGCAATGAACATTCACGC 146225 |||||| || || || ||| | ||| | | ||| | ||| | | Sbjct 409043 AGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATACGATGGATATTAAGAC 409102 Query 146226 CGAGACCGCC-GCCGTACTTGGATATAGCGGCGCAGTCGCCGAGCGTCTCGTAGATGCCG 146284 ||| |||||| || || |||||| || |||||| || || |||||||| || Sbjct 409103 CGATACCGCCAGCTGT-CTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGATACCA 409161 Query 146285 TCAATGCTATCG--CTTCGAATGCCGAGCAGAAAGCACGAGCACATCTGCGCCATCGGCG 146342 || |||||||| |||| || | | ||||| || ||| |||||| | ||| | Sbjct 409162 TCGATGCTATCTTCCTTCATAT--CAATGAGAAAACAGGAGGCCATCTGTGGTTGCGGTG 409219 Query 146343 TCCCCGCCGAGAACAACGTCGGGCTCGCGTGCGTAAACATTTTTCGGCT-CATCATCCGA 146401 | ||||| ||| | || ||| || || ||||| || |||| | ||||| | Sbjct 409220 TTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAA-ATATTTCTGAGACATCAGATTA 409278 Query 146402 TACGTTTCGATAGCGTCTTGAATGTCGTCGCCATGAATGCCCAAAGCGACGCGCATGAGC 146461 ||||||||||| || | | |||||| |||||||||||||| | || || ||||| | | Sbjct 409279 TACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACGCATAATC 409338 Query 146462 ATGTGTTGGGGCCGCTCCGCCA-CTTG--ATTGTCAATCTTTAACAAATAGCCGTTCTCC 146518 |||||||| || ||||| || | |||| |||| || |||| ||| |||| Sbjct 409339 ATGTGTTGCGGACGCTCAGCGACCTTGCCATTG---ATTCGCAACAGATATGACCTCTCT 409395 Query 146519 AGGGTTTTGTATCCGAAA 146536 | |||||| |||||||| Sbjct 409396 AAAGTTTTGAATCCGAAA 409413 Score = 109 bits (120), Expect = 5e-19 Identities = 463/726 (64%), Gaps = 4/726 (1%) Strand=Plus/Plus Query 145056 GATTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGG 145115 |||||||||| || || ||||| || | || || || | || | ||| || ||| | | Sbjct 407878 GATTGACGACTTGGAATTCGCCTGCAAGAACCCGGCGAGAGTAGATGTTTGATGTGTATG 407937 Query 145116 GTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCA 145175 | |||||| | ||||| || ||||| ||| || | || || ||||| || | Sbjct 407938 GCTCAAAACATTCGTTGAAACCGAGGATCTGACTCGTGCTGGCAGTAGGCATCGGAGCAA 407997 Query 145176 CCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCC 145235 | | ||| ||||| | ||||| || ||| || | ||| || || |||| |||| Sbjct 407998 CAAGTAAACTGTTGCGTACACCGTGTTTTGCGATATCCTTCTTGAGGGTGTCCCAGTCCC 408057 Query 145236 ATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGC 145295 | || |||||| |||||| |||||| |||||||||||| | |||| |||| Sbjct 408058 AAAGGTCAGTCGGAGTCACGTTCCACATATCGTACTGCAAAGTACCCTTTGAAACGGGAG 408117 Query 145296 TGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 |||| | | | ||| || | ||||| | || ||| ||| ||||| Sbjct 408118 AACCTTCATAAGTTTCATAAGGACCATCAACCTTGGCTATGTCACAAGACGCGGTCAGAG 408177 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCATCGCTCTCGT 145415 | | || ||||| ||| ||||| | || | | || | || ||| || Sbjct 408178 CTGCATGGTAGATTGTTTCGAAGATTTGAATATTCAACTGCTTTGCCTCAGGCGAGTCAA 408237 Query 145416 ACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGCC 145475 |||||| |||||| | |||||||| ||||| ||||| | ||||| | || || | Sbjct 408238 ACGGCAATCGCAGCGCAAGGAAAGCATCAGCGAGTCCCTGCACACCCACCGCAATAGGAC 408297 Query 145476 GATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGATATCGATTACGGTCGATAATTT 145535 |||| | ||| ||| |||| || || ||||| |||| ||| || || | Sbjct 408298 GATGACGGAAGTTACTCTTCCTGGCTTCTGGGACGGGATAGTGATTGTTGTCAATGATCT 408357 Query 145536 TATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAACCGAG 145595 | || ||||| | || | || | ||| | | |||| | |||||||| | | | Sbjct 408358 TGTTTAAGTTGAGAACAAGGACTTGTGTGACTTCATGCAATCTCCCAAAGTCATA-CTCG 408416 Query 145596 CCTCGTCAACGA-CCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCCGTC 145654 || || | || | ||| | | | || | ||||||||||| |||||||| Sbjct 408417 CCCCGGACAGGATCGACATATGTGGGCAAAGCAAGGGACGCCAAATTGCAAACTGCGACT 408476 Query 145655 TCCT-CGGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCC 145713 || | ||||| || |||| | | ||| || | |||||| ||| | || ||||| Sbjct 408477 TCGTCCGGCG-CGGTGTACTCGATGATTTCCGTGCACAAGTTGGAGCTCCGAATAGTTCC 408535 Query 145714 CAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCC 145773 || |||| || ||||| || | ||||||||| || || || |||||| | || || Sbjct 408536 AAGGTTTTTTTGGTTACTCTTGCGGTTGCACGCATCTTTATAAAGCATGAAGGGGTTCCC 408595 Query 145774 AGTCTC 145779 |||||| Sbjct 408596 AGTCTC 408601 >seq4836 Length=199183 Score = 111 bits (122), Expect = 1e-19 Identities = 133/181 (73%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 ||||||| || ||||||||||||| || || |||||| |||||||| || ||| | | Sbjct 162949 CCTTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAA 162890 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | |||||||||||||| ||||| || ||||| ||||| |||||| ||| | | | Sbjct 162889 TCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGT 162830 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || ||| ||||||| | || | ||| | || || ||||| || || || |||| Sbjct 162829 CGATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 162770 Query 131225 A 131225 | Sbjct 162769 A 162769 >seq3060 Length=205498 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || || || | ||| || ||||| || ||||||||||| Sbjct 122360 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAA 122301 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || || || ||||| || || ||| |||| || || |||||||| |||||| Sbjct 122300 AGAGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGG 122241 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | || | |||||| |||||| | Sbjct 122240 ATTCCCTCCTTGTCTTGGATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACC 122181 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || | ||| || || ||||||||||| Sbjct 122180 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| || || || || | ||| | || ||||| || ||||||||||| || | Sbjct 122880 CCACCGCGTAAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTC--TG 122823 Query 131068 ATGGTGCGCGA--GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || | | |||| |||||| ||||| ||||| || | || |||||||||||||| || | Sbjct 122822 ATAGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTG 122763 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 | ||||| || ||||| || || |||| | || | || || | ||||| | Sbjct 122762 GAATTCCCTCCTTGTCTTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTA 122703 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||||| ||||| | || || || ||||||||||| Sbjct 122702 CTTCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 >seq2521 Length=135005 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | ||| ||||| || || |||||||| || Sbjct 57572 CCACCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 57631 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| ||||||||||| ||| |||| | ||| |||||||| ||||| Sbjct 57632 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGAGGA 57691 Query 131128 ATTCCTTCTTTGTC 131141 || ||||| ||||| Sbjct 57692 ATGCCTTCCTTGTC 57705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471984178323840