Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015-
11-03] 4,851 sequences; 27,454,949 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq3934 219 5e-52
seq2228 107 2e-18
>seq3934
Length=413549
Score = 219 bits (242), Expect = 5e-52
Identities = 567/856 (66%), Gaps = 16/856 (2%)
Strand=Plus/Plus
Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097
||||| | ||| | ||| || |||| | || || || ||||| || ||||| || ||
Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849
Query 63098 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA--- 63154
|||||||| | || ||||| | || ||| |||||| ||||| | ||||||
Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGG 408906
Query 63155 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63214
||||| | ||| | | ||||| || ||||| ||||| | || ||||| | | |||
Sbjct 408907 AGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCA 408966
Query 63215 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63274
||||||||||| || || || || | |||| ||| || || ||| | || | | |||
Sbjct 408967 GGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026
Query 63275 GGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334
|| | || || || || | || || || |||| || ||| ||| | || ||||||
Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086
Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63394
| || ||||| || || || || | || || || | ||||| ||||
Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146
Query 63395 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 63454
||||| ||||| || || || ||||| ||| |||| | || ||||||||| | |||
Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206
Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514
|| | | |||||||| || || | || || ||||| || ||||| |||| | |
Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGA 409266
Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574
|| | ||||| ||||| || || || || || || |||||| || || ||
Sbjct 409267 GACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCA 409326
Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634
|||||||| | |||||| || || | ||| ||| |||| || ||| ||||| ||
Sbjct 409327 ACACGCATAATCATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATAT 409386
Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 63692
|| | || |||||||| || || ||||| | || ||||| || || || |||| ||
Sbjct 409387 GACCTCTCTAAAGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAA 409444
Query 63693 TAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAAATA 63751
| |||| || |||| || || || |||| | ||| | ||| | |||||
Sbjct 409445 TGGCCGAATTAAGTTCCTCGGCATGCTTCATAAC-AATTCCGTAGGTTTTTTGAGAAATC 409503
Query 63752 ATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA--TCCTCCATCACTT 63809
||||| | || |||||| || || | |||| ||||| || || || ||
Sbjct 409504 ATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAGT--GATAAAGGTCGTCAATGACCG 409561
Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869
| || ||||||| || | |||||||| || || ||||||||||| || || || |
Sbjct 409562 AAGAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGA 409621
Query 63870 TGGCATAATCCGGATG 63885
| ||||| || || ||
Sbjct 409622 TAGCATAGTCTGGGTG 409637
Score = 114 bits (126), Expect = 2e-20
Identities = 147/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909
|||||||| |||||||| || || | | ||||| ||||||||||| || || || ||
Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600
Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969
|| | ||||||| ||||||||| || || | |||| | || ||| | |
Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660
Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029
||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | ||
Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720
Query 62030 ATCGTCTTTTGTGGAATTTCCCA 62052
|| ||| |||| | ||||||||
Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743
>seq2228
Length=283306
Score = 107 bits (118), Expect = 2e-18
Identities = 295/452 (65%), Gaps = 0/452 (0%)
Strand=Plus/Minus
Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413
|| ||| || ||| || ||||| ||||| || || || ||||| || || || || ||
Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857
Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473
| || || || || ||||| || || ||||| ||||| |||| || | |||||
Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797
Query 32474 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533
||||| || || || ||| || || ||||| || |||||| ||| | |
Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737
Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593
||||| || | ||| | ||||||||| |||| | ||||| | ||||| ||
Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677
Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 32653
|| ||||| || || | || | | || ||| | || ||
Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617
Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713
| | || || || ||| ||| ||||||||||| | ||| ||||| || |||||
Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557
Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773
||||| |||||||| |||||||| || || | ||| || || || || || || |||
Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497
Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805
||||| || ||||| || || ||||||||||
Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAA 201465
Score = 93.3 bits (102), Expect = 5e-14
Identities = 199/295 (67%), Gaps = 7/295 (2%)
Strand=Plus/Minus
Query 32922 TCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979
|| || | |||||||||||| | ||||| || | || || || ||||| || ||
Sbjct 201279 TCCTTGATATATGTATCAATGAGCAAAGAGTAGG--TCTCGGAGTGGATGTTCTCCATCA 201222
Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039
|| || || ||||||||||| | ||||| | |||||| ||||| | ||| || |
Sbjct 201221 TGATCTGGAAACCGTAGAAGCAACGGGCCTCTGGAATCTGAACTTCGCCGCTAAAGCGCT 201162
Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099
| | |||||| || || || ||||| || ||||| || ||||| ||||| |
Sbjct 201161 CAAGAAGATTTTCGTTGACGATGCCGTCGGAAGCGGCAAAGAAGGCCAACACATGAGAGA 201102
Query 33100 TAAAATA---TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 33156
| || || || ||||| | | | | |||||| || | | ||||| || | ||
Sbjct 201101 TGAAGTAGCGTTCATCGTCATTTAGTCGATCATTCCAGTCGTGAAGGTCTTTGGACAAAT 201042
Query 33157 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211
| | ||||| | ||||| || || ||||| ||||| || ||||| | ||||||
Sbjct 201041 CGATCTCTTCGGCGGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 200987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633593578139600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |