Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3934 219 5e-52 seq2228 107 2e-18 >seq3934 Length=413549 Score = 219 bits (242), Expect = 5e-52 Identities = 567/856 (66%), Gaps = 16/856 (2%) Strand=Plus/Plus Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 ||||| | ||| | ||| || |||| | || || || ||||| || ||||| || || Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849 Query 63098 CAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA--- 63154 |||||||| | || ||||| | || ||| |||||| ||||| | |||||| Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGG 408906 Query 63155 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63214 ||||| | ||| | | ||||| || ||||| ||||| | || ||||| | | ||| Sbjct 408907 AGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCA 408966 Query 63215 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63274 ||||||||||| || || || || | |||| ||| || || ||| | || | | ||| Sbjct 408967 GGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026 Query 63275 GGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATA 63334 || | || || || || | || || || |||| || ||| ||| | || |||||| Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086 Query 63335 TTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAAC 63394 | || ||||| || || || || | || || || | ||||| |||| Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146 Query 63395 GTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATT 63454 ||||| ||||| || || || ||||| ||| |||| | || ||||||||| | ||| Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206 Query 63455 TGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCA 63514 || | | |||||||| || || | || || ||||| || ||||| |||| | | Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGA 409266 Query 63515 GAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCG 63574 || | ||||| ||||| || || || || || || |||||| || || || Sbjct 409267 GACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCA 409326 Query 63575 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 63634 |||||||| | |||||| || || | ||| ||| |||| || ||| ||||| || Sbjct 409327 ACACGCATAATCATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATAT 409386 Query 63635 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCGTTCGTAAATAA 63692 || | || |||||||| || || ||||| | || ||||| || || || |||| || Sbjct 409387 GACCTCTCTAAAGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAA 409444 Query 63693 TAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCAT-GGTAATACTTGAAATA 63751 | |||| || |||| || || || |||| | ||| | ||| | ||||| Sbjct 409445 TGGCCGAATTAAGTTCCTCGGCATGCTTCATAAC-AATTCCGTAGGTTTTTTGAGAAATC 409503 Query 63752 ATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAA--TCCTCCATCACTT 63809 ||||| | || |||||| || || | |||| ||||| || || || || Sbjct 409504 ATAGGCGCAGGTCGGTTATTTTTCGGGTTAATGTAGT--GATAAAGGTCGTCAATGACCG 409561 Query 63810 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 63869 | || ||||||| || | |||||||| || || ||||||||||| || || || | Sbjct 409562 AAGAGAACTGTTTTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGA 409621 Query 63870 TGGCATAATCCGGATG 63885 | ||||| || || || Sbjct 409622 TAGCATAGTCTGGGTG 409637 Score = 114 bits (126), Expect = 2e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 61850 GTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGA 61909 |||||||| |||||||| || || | | ||||| ||||||||||| || || || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 61910 CCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATA 61969 || | ||||||| ||||||||| || || | |||| | || ||| | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 61970 TGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATA 62029 ||||| || | ||||||| |||||||||||| || |||| ||| |||||||| | || Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 62030 ATCGTCTTTTGTGGAATTTCCCA 62052 || ||| |||| | |||||||| Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743 >seq2228 Length=283306 Score = 107 bits (118), Expect = 2e-18 Identities = 295/452 (65%), Gaps = 0/452 (0%) Strand=Plus/Minus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 || ||| || ||| || ||||| ||||| || || || ||||| || || || || || Sbjct 201916 AGCCATCACACCCGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCC 201857 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAA 32473 | || || || || ||||| || || ||||| ||||| |||| || | ||||| Sbjct 201856 GGCCAACGAGATGTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTT 201797 Query 32474 TCCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACA 32533 ||||| || || || ||| || || ||||| || |||||| ||| | | Sbjct 201796 GCCCAAAGCAACAAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGC 201737 Query 32534 ATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGAC 32593 ||||| || | ||| | ||||||||| |||| | ||||| | ||||| || Sbjct 201736 GTTCATGCCAAGAAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAAC 201677 Query 32594 CGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAA 32653 || ||||| || || | || | | || ||| | || || Sbjct 201676 TGCCTCTGTGATGATGGCCTCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAA 201617 Query 32654 CATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAA 32713 | | || || || ||| ||| ||||||||||| | ||| ||||| || ||||| Sbjct 201616 GAGGAGGCAGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAA 201557 Query 32714 CGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGA 32773 ||||| |||||||| |||||||| || || | ||| || || || || || || ||| Sbjct 201556 AGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACT 201497 Query 32774 AAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 32805 ||||| || ||||| || || |||||||||| Sbjct 201496 GAAGAAGATACCTTCAACGGCTGCAAAGGCAA 201465 Score = 93.3 bits (102), Expect = 5e-14 Identities = 199/295 (67%), Gaps = 7/295 (2%) Strand=Plus/Minus Query 32922 TCTTTAACATATGTATCAATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGG 32979 || || | |||||||||||| | ||||| || | || || || ||||| || || Sbjct 201279 TCCTTGATATATGTATCAATGAGCAAAGAGTAGG--TCTCGGAGTGGATGTTCTCCATCA 201222 Query 32980 CCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTT 33039 || || || ||||||||||| | ||||| | |||||| ||||| | ||| || | Sbjct 201221 TGATCTGGAAACCGTAGAAGCAACGGGCCTCTGGAATCTGAACTTCGCCGCTAAAGCGCT 201162 Query 33040 CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTA 33099 | | |||||| || || || ||||| || ||||| || ||||| ||||| | Sbjct 201161 CAAGAAGATTTTCGTTGACGATGCCGTCGGAAGCGGCAAAGAAGGCCAACACATGAGAGA 201102 Query 33100 TAAAATA---TTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATAT 33156 | || || || ||||| | | | | |||||| || | | ||||| || | || Sbjct 201101 TGAAGTAGCGTTCATCGTCATTTAGTCGATCATTCCAGTCGTGAAGGTCTTTGGACAAAT 201042 Query 33157 CCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGAT 33211 | | ||||| | ||||| || || ||||| ||||| || ||||| | |||||| Sbjct 201041 CGATCTCTTCGGCGGTCCAGAAGGACGCCTCGGCCTTCTTGTACATCTGCCAGAT 200987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633593578139600