Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq3060 127 2e-24 seq4836 98.7 9e-16 >seq3060 Length=205498 Score = 127 bits (140), Expect = 2e-24 Identities = 159/216 (74%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||||||| ||| | ||||| | ||||| ||||| || Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| ||||| |||| || | || | ||| ||||| || || |||||||| || Sbjct 122714 GACACAATCGACAACGTCA---AAACTAAGATTCAA-GACAAGGAGGGAATTCCACCAGA 122769 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | ||||||||||||||||| | || || | |||||| | || || Sbjct 122770 CCAGCAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTA 122829 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 ||| ||||| ||||| || || || ||| | || || Sbjct 122830 CAACATTCAGAAAGAGTCTACACTGCATCTCGTCCT 122865 Score = 111 bits (122), Expect = 1e-19 Identities = 152/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| || ||||| || | || ||| | || || |||||||| Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| | ||| | |||| ||| || |||||||| || ||||| ||||| Sbjct 122942 GACACGATCGACAACGTTAAGACGAAAATTCAA-GATAAAGAAGGTATCCCACCCGACCA 123000 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | || ||||| || || || | || |||| ||| || | |||||| || Sbjct 123001 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAA 123060 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGT 25207 || || || ||| ||| || ||||| || Sbjct 123061 CATCCAGAAGGAAAGCACTCTGCATTTGGT 123090 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 24996 ACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCG 25055 || ||||| || ||||| ||||||||||| || || ||||||| | || || ||||| Sbjct 122131 ACGATGCAGATTTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCC 122190 Query 25056 TCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGAC 25115 ||| |||||||| ||||| ||| ||| ||||| || || || || |||||| Sbjct 122191 GGTGATACTATCGACAATGTGAAGACAAAGATCCAAGACAAGGAGGGAATCCCTCCTGAC 122250 Query 25116 CAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTAC 25175 || || || | || || || || ||||| | ||||||| || ||| | |||||| Sbjct 122251 CAGCAACGCTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACTCTTTCGGATTAC 122310 Query 25176 AATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || ||||| || || || || || || Sbjct 122311 AACATCCAGAAGGAATCTACCCTTCACTTGGTTCT 122345 >seq4836 Length=199183 Score = 98.7 bits (108), Expect = 9e-16 Identities = 129/179 (72%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 25008 TTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACTATC 25067 || || ||||| | ||||| || | ||||| | ||||||||||| ||||| ||| Sbjct 162769 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAAGTGGAGTCCAGCGACACGATC 162828 Query 25068 GAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATT 25127 || ||||| |||||| ||||| ||||| ||||| |||||||| ||||| | Sbjct 162829 GACAATGTGAAGAGCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTG 162888 Query 25128 ATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAA 25186 ||||| || || || || | || || | || ||| || ||||||||||||| ||||| Sbjct 162889 ATTTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACTTTGAGCGATTACAATATCCAAAA 162947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433302380971565