Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq1315 197 3e-45 seq3060 168 1e-36 seq2521 113 8e-20 seq4836 109 1e-18 seq3760 105 1e-17 seq4068 93.3 8e-14 seq3833 84.2 4e-11 >seq1315 Length=3472 Score = 197 bits (218), Expect = 3e-45 Identities = 381/554 (69%), Gaps = 10/554 (2%) Strand=Plus/Minus Query 268204 CTGGACCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACAT 268263 ||||| || || || ||||| || || |||| || ||| ||||| ||||| Sbjct 1937 CTGGATACCCGTCGCGATCACGAAATCTTCTGCAACATCCTGCTGCAGCATCATCCAC-- 1880 Query 268264 TGCTT-CG-ACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGG 268321 ||| | || ||||| ||| ||| || ||||| |||||| || | ||||| || | | Sbjct 1879 TGCATGCGCACATAATCCTTCGCGTGCCCCCAGTCGCGCAATGAAGCTATGTTACCCATG 1820 Query 268322 AACAGGCATTTCTGCTTGCCGAGCTTCACGCGTGCAAGACCGCGAGTGATTTTTCGGGTC 268381 ||| |||| || | || || | | || | ||||||||||||||| || || Sbjct 1819 TACAAGCATGGCTCCAGCCCCTGCGCGATGTTTGACAAACCGCGAGTGATTTTGCGCGTT 1760 Query 268382 ACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAAC 268441 ||||| |||||||| | | ||||| ||||| || || |||||||| ||||| ||| | Sbjct 1759 ACGAATGTCTCGCCTCTACGTGGGCTTTCGTGATTAAACAGGATGCCATTGCAAGCGTAT 1700 Query 268442 ATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCG 268501 |||||||| || || ||||||||||| | |||| ||||| | | |||||| || || Sbjct 1699 ATGCCATAGGCTTCTCGGTAGTTCACCGTCATCCAATATGCGTATAGCTTTGCTACCGCA 1640 Query 268502 TACGGAGAACGTGGATGGAAGGGCGTCGTGATC-TTTTGAGGGATTTCTCGGACTTTGCC 268560 || || || || |||| || || || || || || || |||| | || || Sbjct 1639 TATGGTGATCGGGGATAAAATGGTGT-GTTCTCGCGCTGCGGTGTTTCCTGCACCGATCC 1581 Query 268561 AAAGAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCG 268620 | || || || ||||| || |||||||| ||||| | || || | || | | || Sbjct 1580 GTAAAGTTCCGACGTCGACGCCTGGTAGAATTTTGTCTTCTTCTCCAATCCCAAAAAGCG 1521 Query 268621 GATTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCAT 268680 ||||| || |||||||| | || || | ||||| || ||||| ||||| |||||| Sbjct 1520 AATTGCTTCCAGCAAACGCAACGTACCAAGCCCATCAACATCCGCGGTATATTCCGGCGC 1461 Query 268681 CTCGAA--TGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTG 268738 || || | ||| | || || || || || || |||||||||||||| ||||| | Sbjct 1460 TTCAAAACTAACAGC--CACGTGACTTTGAGCACCGAGGTTATAAACCTCGTCCGGCTGT 1403 Query 268739 ACCTGCTGCACGAT 268752 |||| ||||| ||| Sbjct 1402 ACCTCCTGCATGAT 1389 >seq3060 Length=205498 Score = 168 bits (186), Expect = 1e-36 Identities = 177/233 (76%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 68229 TAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAA 68288 || || || ||||| | | ||||||||| || || ||| || || |||||||||||| Sbjct 123114 TAGTTGCCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAA 123055 Query 68289 TCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCG 68348 ||||||||||||| ||||| || | |||||| || || || ||||||| ||||||||| Sbjct 123054 TCGGAGAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCG 122995 Query 68349 GGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGAT 68408 ||||| || ||||| || |||||||| || | ||| ||| ||||| ||||||| || Sbjct 122994 GGTGGGATACCTTCTTTATCTTGAATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGAC 122935 Query 68409 TCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || ||||| || || || || || || | ||||| || || || ||||| Sbjct 122934 TCGACCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | |||||||| || || || || || |||||||| ||||| || Sbjct 122360 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAA 122301 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | ||| || || ||||| || | | ||| ||||| || || Sbjct 122300 AGAGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGG 122241 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||| ||||||| ||| || ||||| || || | || || || Sbjct 122240 ATTCCCTCCTTGTCTTGGATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACC 122181 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || | |||||||| || |||||||| Sbjct 122180 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| | ||| | || | || || || |||||||| || ||||| || || || Sbjct 122880 CCACCGCGTAAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGAT 122821 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | ||| || ||||| || || | | || ||||| |||||| Sbjct 122820 AGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGA 122761 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| | |||||| ||||| ||||||| || |||||| Sbjct 122760 ATTCCCTCCTTGTCTTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTACT 122701 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||| |||||||| || | |||||| || || |||||||| Sbjct 122700 TCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 129 bits (142), Expect = 1e-24 Identities = 148/198 (75%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 68255 CAAG-TGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTA 68313 |||| || || || || || ||||||||||||||||| ||||| || | ||||| || | Sbjct 122633 CAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTGCGACCATCCTCAA 122574 Query 68314 ACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAA 68373 || || || ||||| || | | ||| || || || || ||||| ||||| || |||| Sbjct 122573 GTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCCTCCTTATCCTGAA 122514 Query 68374 TCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTC 68433 |||| | || ||| |||||||| || | ||||| || || | ||||| || |||| Sbjct 122513 TCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGAGTGATAGTCTTTC 122454 Query 68434 CCGTGAGGGTCTTGACGA 68451 ||||||| |||||||||| Sbjct 122453 CCGTGAGAGTCTTGACGA 122436 >seq2521 Length=135005 Score = 113 bits (124), Expect = 8e-20 Identities = 106/135 (79%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || ||||||||||| |||||||| || || ||| Sbjct 57572 CCACCACGGAGACGGAGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAG 57631 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| ||||| | ||| ||||| || ||| Sbjct 57632 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGAGGA 57691 Query 68355 ATGCCTTCCTTGTCT 68369 ||||||||||||||| Sbjct 57692 ATGCCTTCCTTGTCT 57706 >seq4836 Length=199183 Score = 109 bits (120), Expect = 1e-18 Identities = 136/181 (75%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 |||||||| || |||||| | || | || || || | |||||| || ||||| || Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAATC 162888 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGC-CTTGACGGCCTC 68392 | | || ||||| || ||||||||||||||||| || || ||||| ||| || || Sbjct 162887 AAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGAT-TTTGCTCTTCACATTGTC 162829 Query 68393 GATGGTGTCTGCTG-ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 ||| ||||| |||| | || ||||| | |||||| || || || |||||||||||||||| Sbjct 162828 GATCGTGTC-GCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 162770 Query 68452 A 68452 | Sbjct 162769 A 162769 >seq3760 Length=8275 Score = 105 bits (116), Expect = 1e-17 Identities = 199/287 (69%), Gaps = 12/287 (4%) Strand=Plus/Plus Query 268247 TGGAGCATTTTCCACATTGCTTCGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCG 268306 || ||||| |||||| |||| || || || ||| ||||| |||||||| ||| Sbjct 5340 TGCAGCATGCGCCACATCCCTTCAACGTATTCTTTCGCGAAACCCCAGTCGCGCTTGGCG 5399 Query 268307 TCCATGTTCCCGAGGAACAGGCATTTCT-GCTTGCCGA----GCTTCACGCGTGCAAGAC 268361 |||| ||| || || ||| || || ||||||| | | || ||| | | | Sbjct 5400 TCCAAGTTACCCAGCTCCAG-CACCTCGAGCTTGCCCAAGCGGATTTTGGCGAACGCGTC 5458 Query 268362 CGCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGA 268421 || ||||||||||||| || || | |||||| | ||||||||||||||||| | Sbjct 5459 CG----TGATTTTTCGGGTGACAAATTCCCGGCCACGCAATGGGCTCTCGTGGTTGAACA 5514 Query 268422 GGATGCCGTTGCAC-GCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTAT 268480 |||||||| | ||| |||| |||||||| |||||||||||||| | |||||| Sbjct 5515 GGATGCCGCT-CACTCCGAAGATGCCATAGCTTTCACGGTAGTTCACAGTCATCCAGTGG 5573 Query 268481 GCAAACATCTTTGCAACTGCGTACGGAGAACGTGGATGGAAGGGCGT 268527 ||| | | ||| || || |||| ||| || || | ||| ||||| Sbjct 5574 GCATAGAGCTTGGCCACGCCGTAGGGACTGCGCGGGTAGAAAGGCGT 5620 >seq4068 Length=1467 Score = 93.3 bits (102), Expect = 8e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 186062 AGCAGCTGCTTCGTGTCCTTGGGGAAGCAGTAGCCGCCGTAGCCGAAGCTCGGGTTGCAA 186121 ||||| || ||||||||||||| | ||||||||| ||| | ||||| || ||| Sbjct 885 AGCAGTTGGCTCGTGTCCTTGGGCAGGCAGTAGCCACCGAAACCGAACGAGGGATTGTTG 826 Query 186122 TAGCCTCCGCCAATACGTGGCTCGTGCGTGATGCCCTCGATGATGTCCTTTGCATTCAGA 186181 ||| |||| || || || || | | ||| |||| ||| | | || | || Sbjct 825 TAGTACGCGCCGATCCGCGGGTCCAGGCACACGCCGTCGACGATCTGCCGCGCGTCGAGG 766 Query 186182 CCATTCACCATTGCAAACGAGTCGAGCTCATTGAAAAACGACACGCGCATCGCGAGGTAC 186241 ||| ||| ||||||||||| || |||||||| || | || |||||||| ||||| Sbjct 765 CCACGGGCCAGGGCAAACGAGTCCAGTTCATTGAAGAAGGCAACCCGCATCGCCAGGTAG 706 Query 186242 GTATTCGCAAACAACTTGACGCTCTCTGCCTCGC 186275 || ||||| |||| ||||| | ||| || |||| Sbjct 705 GTGTTCGCGAACAGCTTGATGGCCTCGGCTTCGC 672 >seq3833 Length=1292 Score = 84.2 bits (92), Expect = 4e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 186362 TCGCCAATGATGATGCGAGAGGGGTGGAGGTTGTCGTAGAGTGCACGACCCTCGCGCAGG 186421 ||||| | ||||||||| ||||| || || ||||||| || ||||| || ||||||||| Sbjct 81 TCGCCGACGATGATGCGCGAGGGATGCAGATTGTCGTGCAGCGCACGGCCTTCGCGCAGG 140 Query 186422 AACTCCGGGGAGAATGCGATGTTCTTGGTGCCGAACGTGGCGCGCATAGAGTCAACAAAC 186481 || || ||| ||| | | | |||||||| | || |||| | ||| || || Sbjct 141 AATTCGGGGCTGAAGATCACCTGATCGGTGCCGAGCCGCGCACGCACATCGTCGACGAAA 200 Query 186482 CCGATGGGGATGGTCGACTTAATGACAAT 186510 || | |||||||||||| || | ||| || Sbjct 201 CCAACGGGGATGGTCGATTTGACGACGAT 229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921566515121720