Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3060 136 9e-27 seq4836 114 3e-20 seq4416 98.7 2e-15 seq2228 84.2 5e-11 >seq3060 Length=205498 Score = 136 bits (150), Expect = 9e-27 Identities = 163/220 (74%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || ||||| | || ||| |||||||| ||||| || | | Sbjct 122652 CCACCTCGGAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAG 122593 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG- 288365 || ||||| || || || | |||||| || ||||| |||| || || ||| ||||| Sbjct 122592 AGAGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGA---TCTGGA 122536 Query 288366 --GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||| || || |||||||| || || | ||||||||| || || | |||| ||||| Sbjct 122535 GGGATGCCCTCCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCA 122476 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || ||||| ||||| ||||| || || ||||||||||||| Sbjct 122475 ACCTCGAGAGTGATAGTCTTTCCCGTGAGAGTCTTGACGA 122436 Score = 122 bits (134), Expect = 2e-22 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || ||||| | ||| | ||| | ||| | |||||||| || ||||| ||||| |||| | Sbjct 123108 CCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGAG 123049 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || ||||| || ||||| || |||||||| |||| Sbjct 123048 AGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGGG 122989 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || ||||||||||| || ||||||| || ||||| || || | || ||| || || Sbjct 122988 ATACCTTCTTTATCTTGAATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGACTCGACC 122929 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || | || || ||||| ||||| | ||||| || || || ||||| Sbjct 122928 TCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 >seq4836 Length=199183 Score = 114 bits (126), Expect = 3e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 ||||||||||| || ||| | || || ||||| || | || ||||| ||||| ||| Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAATC 162888 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT-TTCACGTTTTC 288404 | |||||| || | || || ||||| || ||||||||||| ||| ||||| || || Sbjct 162887 AAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTT-GCTCTTCACATTGTC 162829 Query 288405 TATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||||| || || ||||| || ||||| ||||| ||||| || ||||||||||| Sbjct 162828 GATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 162769 >seq4416 Length=140045 Score = 98.7 bits (108), Expect = 2e-15 Identities = 252/371 (68%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 325964 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 326023 ||||| ||||| ||||| | ||| ||||| || || || | | | |||||| Sbjct 48883 ACGATTGGCGTAATGAATTCAATCAGAAACCCCGGTATCCTAAGTAAACT-GGGAAAGGC 48825 Query 326024 CTATGGAAAA-AGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 326082 | | ||| | |||| || | ||||| ||||||| | |||||| ||| || || Sbjct 48824 CACTTGAAGATAGTTGATTAGTAGACCTTTAATGTGACTGCCGTCATGGTCCTGATCAGT 48765 Query 326083 CATGATCATCACATGACCGTAACGAAG-CGAGGACGTGTCTTTGTACACTTTACCGGTTT 326141 ||||||||| | |||||| |||||||| | | || |||||| | ||| | || || Sbjct 48764 CATGATCATGAGATGACCATAACGAAGGCCACGA-GTGTCTGTATACTCCTTCTTATGTT 48706 Query 326142 GAAGGCCGAGAATTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTG--CCA 326198 | |||||||| | | ||||| | | ||| | || | |||||| | || ||| | | Sbjct 48705 GTAGGCCGAGGAAATTTTTGAT-GTTTTGAATCTCCTGGTTCTTGGAAAT--TTGGTCAA 48649 Query 326199 CGGATGCATCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 326258 |||| ||||| ||||| || | || ||||| || | ||||| || ||| | ||| Sbjct 48648 CGGAAGCATCACGGACATTGAGCAGCTTTCCTCGCAATGGGAAAACGCCAAAGAGATCGG 48589 Query 326259 GACCGACCACGGA-CAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGA 326317 | || || || || | |||| || |||||||| ||||||||||| || || ||| Sbjct 48588 GTCCAACTACAGATCTGCCC-GCCATTGCAAGACCTTTGGCGGAATCCCCTTCGGTGAGA 48530 Query 326318 ATGAGAGTGCA 326328 || || ||||| Sbjct 48529 ATCAGCGTGCA 48519 >seq2228 Length=283306 Score = 84.2 bits (92), Expect = 5e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 268486 TGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGGACCACCGAGGAAGTTCCTCTTAAC 268545 ||| | |||||||||||||| | ||| |||| |||||| |||| || | | | | Sbjct 200990 TGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACCGCCGAAGAGATCGATTTGTCC 201049 Query 268546 GCAGACGTTGCAGACTGGCGTGAGAAACTGAACAACGATGAACGACACTTCATCAAACAT 268605 |||| || |||||| ||| ||| || |||||||||| |||||||| ||| Sbjct 201050 AAAGACCTTCACGACTGGAATGATCGACTAAATGACGATGAACGCTACTTCATCTCTCAT 201109 Query 268606 ATTCTGGGGTTCTTTGCAGGCTCCGACGGTATCGTGATGGAAAATCTTC 268654 | ||| |||||||| | |||||||| ||||| | |||||||||| Sbjct 201110 GTGTTGGCCTTCTTTGCCGCTTCCGACGGCATCGTCAACGAAAATCTTC 201158 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179581080423978