Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq2228 116 8e-21 seq4416 104 5e-17 >seq2228 Length=283306 Score = 116 bits (128), Expect = 8e-21 Identities = 179/253 (71%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 243502 ATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGG 243561 ||||||||||| |||||||| | || ||||||||| | || ||| ||||||| Sbjct 201662 ATCATCACAGAGGCAGTTGAGATTGAGAAGGAATTCTTAACTGATGCTCTTCCATGTGCC 201721 Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||| ||||||||||| | | |||||| | || || ||||| || || |||||| | | Sbjct 201722 CTTCTTGGCATGAACGCCAAGCTCATGTGCCAATATATCGAGTTTGTTGCCGACAGACTG 201781 Query 243622 TTCATCGCGCTTGGTTATGAGAAAG-TGTACAACTCCAAGAACCCCTTTGCCTTTATGGA 243680 | | || |||| | | |||| | ||||| ||| ||||| |||| ||||||||| Sbjct 201782 CTTGTTGC-TTTGGGCAACAAAAAGTTCTACAATGCCACCAACCCATTTGACTTTATGGA 201840 Query 243681 GCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAACG 243740 ||| ||| | || || || ||||||||||| ||||| || ||||||| || Sbjct 201841 TAACATCTCGTTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGATTACCAGAA 201900 Query 243741 CCCTGGTGTGATG 243753 | ||||||||| Sbjct 201901 GGCGGGTGTGATG 201913 >seq4416 Length=140045 Score = 104 bits (114), Expect = 5e-17 Identities = 253/371 (68%), Gaps = 12/371 (3%) Strand=Plus/Minus Query 298085 ACGATAGGCGTGATGAACTTCTTCAAGAACCCTGGAATTTCTAGAAGATTAGGGAAACAG 298144 ||||| ||||| ||||| | ||| ||||| || || || | | | |||||| Sbjct 48883 ACGATTGGCGTAATGAATTCAATCAGAAACCCCGGTATCCTAAGTAAACT-GGGAAAGGC 48825 Query 298145 CTATGGAAAA-AGTTCATGACGAGACCAGAAATGTGAGTTCCGTCAACATCCGCGTCGGT 298203 | | ||| | |||| || | ||||| ||||||| | |||||| ||| || || Sbjct 48824 CACTTGAAGATAGTTGATTAGTAGACCTTTAATGTGACTGCCGTCATGGTCCTGATCAGT 48765 Query 298204 CATGATCATCACATGACCGTAACGAAG-CGAGGACGTGTCTTTGTACACTTTACCGGTTT 298262 ||||||||| | |||||| |||||||| | | || |||||| | ||| | || || Sbjct 48764 CATGATCATGAGATGACCATAACGAAGGCCACGA-GTGTCTGTATACTCCTTCTTATGTT 48706 Query 298263 GAAGGCCGAGAATTTGTTTGAGCGCTGTGATT-TCTTCGTTCTTCGTGATGCTTG--CCA 298319 | |||||||| | | ||||| | | ||| | || | |||||| | || ||| | | Sbjct 48705 GTAGGCCGAGGAAATTTTTGAT-GTTTTGAATCTCCTGGTTCTTGGAAAT--TTGGTCAA 48649 Query 298320 CGGATGCATCGCGGACATTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGC 298379 |||| ||||| |||||||| | || ||||| || | ||||| || ||| | ||| Sbjct 48648 CGGAAGCATCACGGACATTGAGCAGCTTTCCTCGCAATGGGAAAACGCCAAAGAGATCGG 48589 Query 298380 GACCGACCACGGA-CAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGA 298438 | || || || || | |||| || |||||||| ||||||||||| || || ||| Sbjct 48588 GTCCAACTACAGATCTGCCC-GCCATTGCAAGACCTTTGGCGGAATCCCCTTCGGTGAGA 48530 Query 298439 ATGAGAGTGCA 298449 || || ||||| Sbjct 48529 ATCAGCGTGCA 48519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102811452216850