Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq3934 113 4e-20 seq2228 109 5e-19 seq3060 107 2e-18 >seq3934 Length=413549 Score = 113 bits (124), Expect = 4e-20 Identities = 363/554 (66%), Gaps = 17/554 (3%) Strand=Plus/Plus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTT---CCGC 154077 |||| |||| |||||| ||||||| || | ||| | ||| || || || || | Sbjct 408923 AGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCAC 408982 Query 154078 CCTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 | || ||||| | || | ||||||| ||||| || | |||||| | | ||| | | Sbjct 408983 CTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTAG 409042 Query 154138 CGGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACGC 154197 || |||||| || || | | ||| ||||| | |||| | |||| | Sbjct 409043 AGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATACGATGGATATTAAGAC 409102 Query 154198 CAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCG 154256 | || ||||| || || ||| || || ||||||| || || |||||| || Sbjct 409103 CGATACCGCCAGCTGT-CTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGATACCA 409161 Query 154257 TCGATGCTATCGTCGCGGACGCCGAGCAAGAAACACGAACACATTTGCGGAATGCGC-GT 154315 ||||||||||| || | | | | ||||| || ||| || || |||| || Sbjct 409162 TCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGT-TGCGGTGT 409220 Query 154316 TCCCGCC--GAAAAGAGGGTGGGACTCGCGTGCGTAAACAGTTTTTGGCTCATCATGCGG 154373 |||||| |||||||| | |||| || || ||||| ||| || ||||| Sbjct 409221 TCCCGCGTTGAAAAGAGTGGGGGAA--GCATGTGTAAAATATTTCTGAGACATCAGATTA 409278 Query 154374 TACGTTTCGATGGCGTCTTCGATATCATCGCCGTGAATGCCGAGCGCGACGCGCATGAGC 154433 ||||||||||| || | || || || ||||| |||||||| | ||| || ||||| | | Sbjct 409279 TACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACGCATAATC 409338 Query 154434 ATGTGCTGCGGACGTTCGGCGAC---TCTATTGTCAATCTTCAAGAGATATCCATTTTCG 154490 ||||| |||||||| || ||||| | |||| || ||| |||||| | || Sbjct 409339 ATGTGTTGCGGACGCTCAGCGACCTTGCCATTG---ATTCGCAACAGATATGACCTCTCT 409395 Query 154491 AGGGTTTTGTAACCGAAATACTTGTATTCAAAATCTAGCTCATGAGCGATGGCCGCATCG 154550 | |||||| | |||||||||| || | ||||| | |||| | | ||||||| || Sbjct 409396 AAAGTTTTGAATCCGAAATACTGATAGTTGAAATCACGATCATAAACAATGGCCGAATTA 409455 Query 154551 AGCGTCGCGGCATG 154564 || | ||||||| Sbjct 409456 AGTTCCTCGGCATG 409469 >seq2228 Length=283306 Score = 109 bits (120), Expect = 5e-19 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 52614 GAGGCGGTGGCTATCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGC 52673 ||||| || | || || ||||| || || || | || || || | || || ||| Sbjct 201671 GAGGCAGTTGAGATTGAGAAGGAATTCTTAACTGATGCTCTTCCATGTGCCCTTCTTGGC 201730 Query 52674 ATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTG-TTGGTGCA 52732 |||||||| || ||||||| | || ||||||||||| || || | ||| ||| ||| Sbjct 201731 ATGAACGCCAAGCTCATGTGCCAATATATCGAGTTTGTTGCCGACAGACTGCTTGTTGCT 201790 Query 52733 GCTCGGGCAGCCAAA-GTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACATTT 52791 | ||||| | ||| || || ||| || ||| || ||||| |||||| | ||||| | Sbjct 201791 --TTGGGCAACAAAAAGTTCTACAATGCCACCAACCCATTTGACTTTATGGATAACATCT 201848 Query 52792 CGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 || | | |||||||||||||| ||||||||||| || || || || Sbjct 201849 CGTTGGCCGGCAAGACCAACTTCTTCGAGAAGCGGGTTGGTGATTA 201894 >seq3060 Length=205498 Score = 107 bits (118), Expect = 2e-18 Identities = 146/198 (74%), Gaps = 8/198 (4%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGA--GTCCTCGAGTTGTTTACCGG 138478 ||||| || ||||||||||||| || |||| |||| ||||||||| ||||| |||| Sbjct 122847 GACTCTTTCTGAATGTTGTAGT--CTGATAGCGTGCGACCGTCCTCGAGCTGTTTGCCGG 122790 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || | |||||| ||||| || || || || || ||||| ||| | || ||||| Sbjct 122789 CAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTC-TTGAATCTTAGTTTTG 122731 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | ||||| | ||||| || || | ||| | ||||| || |||| || Sbjct 122730 ACGTTG-TCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTTTTTCCGGTCAAGGT 122672 Query 138597 TTTTACAAAAATCTGCAT 138614 || |||||||||||||| Sbjct 122671 CTTCACAAAAATCTGCAT 122654 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTA---TGTTTGACTCCTTTTGAATGTTGTAGTC 138443 |||||| ||||| | ||| || ||||| | || || ||||| || ||||| || || Sbjct 123109 GCCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTT---TCCTTCTGGATGTTATAATC 123053 Query 138444 GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGG 138503 | | || || ||||| || || || || | | |||| || ||||||||||| || Sbjct 123052 GGAGAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGG 122993 Query 138504 AGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGAC 138561 || ||||||||||| || ||| |||| || |||| ||| || | ||||| | |||| Sbjct 122992 TGGGATACCTTCTTTATC-TTGAATTTTCGTCTTAACGTTG-TCGATCGTGTCTGACGAC 122935 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| | || | || || || || | || || |||||||| ||||| Sbjct 122934 TCGACCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496232307888720