Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq3060 125 6e-24 seq4836 82.4 7e-11 >seq3060 Length=205498 Score = 125 bits (138), Expect = 6e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| | ||||| || | |||||| || |||||| ||||| ||||||||| | Sbjct 123108 CCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGAG 123049 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | || | ||| || | || ||||| || | || | ||| || ||||| || || Sbjct 123048 AGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGGG 122989 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || |||||||||||||||| |||| || | | || | || | ||||| || |||||||| Sbjct 122988 ATACCTTCTTTATCTTGAA-TTTTCGTCTTAACGTTGTCGATCGTGTCTGACGACTCGAC 122930 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || | |||| || |||||||||| || || |||||||||||||| Sbjct 122929 CTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | || ||||| || || |||||||||||||| |||||||| Sbjct 122655 ATACCACCTCGGAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCA 122596 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | ||| || | |||||| || ||| | ||||| |||||||| || || Sbjct 122595 GAGAGAGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGA 122536 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || ||||| |||| | || |||| || | || | ||| ||||| || || Sbjct 122535 GGGATGCCCTCCTTATCCTGAA-TCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTC 122477 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTAC 45328 || |||||||| | || || || || ||||| || || Sbjct 122476 AACCTCGAGAGTGATAGTCTTTCCCGTGAGAGTCTTGAC 122438 >seq4836 Length=199183 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/207 (69%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 |||| | ||| | ||||| || | ||||||||||||| |||||||| | || Sbjct 162974 CCTCCAAACT-GCTGCAGGGTAAGTACCTTTTGGATATTGTAATCGCTCAAAGTACGGCC 162916 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 || || | || ||||| ||| | ||||| || |||||||| || ||||||||||| || Sbjct 162915 GTCCTCGAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTT 162856 Query 45245 ATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || || ||||| || | || | |||||| ||||| ||||| || || | Sbjct 162855 GTCCTGGATTTTGCTCTTCACATTGTCGATCGTGTCGCTGGACTCCACTTCAAGGGTGAT 162796 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAA 45331 || |||||||| || || || || || Sbjct 162795 AGTCTTGCCGGTGAGGGTCTTGACGAA 162769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451975791655960