Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2228 114 2e-20 seq4759 102 1e-16 >seq2228 Length=283306 Score = 114 bits (126), Expect = 2e-20 Identities = 297/451 (66%), Gaps = 4/451 (1%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || |||||||||||||||||||| ||||| || | | ||| || ||||| Sbjct 201895 GTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGATGTTATCCAT 201836 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAA--TTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 ||| ||||||||||| | | || | | || ||| ||| || | || || Sbjct 201835 AAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTTGCCCAAAGCAACA--AGCAGT 201778 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 | || | || |||| || || | |||| || | |||||| || | ||| | Sbjct 201777 CTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGCGTTCATGCCAAGAAGGGCA 201718 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 ||||| || || || | ||| |||||||||| || || || || | |||||| Sbjct 201717 CATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCTGTGATGATGGCC 201658 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACTCT 127528 | || | || || | || ||| | |||||| ||||| || Sbjct 201657 TCAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAAGAGGAGGCAGGCAAAGTCG 201598 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 ||||||||||||||||||||| || | ||||||||| || ||||| ||||| || Sbjct 201597 GTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAAAGTGAGACCGGGCATAAGG 201538 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 127648 || || ||||||||||||||||| | | || |||||| ||||||||| || || || Sbjct 201537 CCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACTGAAGAAGATACCTTCAACG 201478 Query 127649 CACGCGAACGCAAATAGACGCTCGGCAAAGG 127679 || || |||| || || | ||| |||| Sbjct 201477 GCTGCAAAGGCAACCAGGCGTTGGGCGAAGG 201447 >seq4759 Length=494668 Score = 102 bits (112), Expect = 1e-16 Identities = 332/506 (66%), Gaps = 35/506 (7%) Strand=Plus/Minus Query 12704 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 12763 |||||| || || || || | | ||| | |||||| | ||| | ||| || | || Sbjct 212480 ATCAAATCGTCCAGGACGCATCAAGGCCTTGTCAAGCACATCCGGTCTGTTAGTACCGGC 212421 Query 12764 GATGACAACGA--TGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAGTTGATTG 12821 || ||| || | ||| || | ||| ||| || |||||||| ||||| | |||||| Sbjct 212420 GAGGACGACCACCTGCTCGGATG--TATTGAATCCGTCCATCTCGGTCAAAATCTGATTG 212363 Query 12822 ATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCA--CTGCGTTGCT------ 12873 | || ||| ||||| || || || ||||| | |||| ||||| Sbjct 212362 AGTGTGCTTTCTCGTTCGTCGTTACCG------CCACCGAAATTCTGCTTTGCTCTTGAT 212309 Query 12874 -TACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACT 12932 |||| | |||||||| ||||| ||||||| ||| ||||| ||| | || ||| | Sbjct 212308 TTACCAATAGCGTCAATCTCGTCGATGAAAATGATGCACGGGGTATTCTTTCGCGCAGTT 212249 Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG-- 12990 |||| | ||| ||||| | | ||| ||||| |||||||||||||| || | | Sbjct 212248 GCAAAAAGATCACGCACGCGAGATGGACCAACACCGACAAACATCTCCACGAATTCAGAA 212189 Query 12991 CGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGG 13050 | | | ||| || | ||| || ||| |||||||| || |||| ||| || | | Sbjct 212188 CCACTG-ACACTGTA-GAAAGGAACGCCCGATTCACCAGCTGTGGCCTTGGCCAGCAACG 212131 Query 13051 TCTTCCCCGT-CCCTGGTTTCCCCGCGAGAAG--GGCACCACGTGGGATCCTGGCACCA- 13106 |||| || || ||| || ||| || ||| |||||||| || ||| | |||||| Sbjct 212130 TCTTACCGGTACCCGGGGGTCC---TGATAAGATAGCACCACGAGGAATCTTCGCACCAA 212074 Query 13107 --CTTCCAAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCT 13164 ||| || | |||| |||| || || ||| |||| ||| | |||| ||| Sbjct 212073 GCCTTTGGAACT---GCTCAGGTTTCTTGAGGAAGCTAACGAATTCCATAATTTCAACCT 212017 Query 13165 TCGCGGCGTCGATGCCTTCAACGTCA 13190 | || |||| ||||| |||||||| Sbjct 212016 TGGCTTCGTCCATGCCAGCAACGTCA 211991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613469998457160