Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq3060 109 1e-18 seq2521 100 7e-16 seq4836 93.3 1e-13 >seq3060 Length=205498 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||| |||||||| || |||||||||| ||| || |||| | ||| | ||||| Sbjct 122637 AGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTGCGACCATCC 122578 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || || ||||| || | || ||||| || ||| || || || ||| Sbjct 122577 TCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCCTCCTTATCC 122518 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| |||||| |||| ||| || | | ||| || || | ||||| ||| Sbjct 122517 TGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGAGTGATAGTC 122458 Query 199598 TTACCCGTGAGAGTTTTCAC 199617 || ||||||||||| || || Sbjct 122457 TTTCCCGTGAGAGTCTTGAC 122438 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 199439 TCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAG 199498 ||||| |||| ||| || || | | |||| ||||| || ||||||||||| || ||| Sbjct 123072 TCCTTCTGGATGTTATAATCGGAGAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAG 123013 Query 199499 ATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGAT 199558 ||||| ||||| ||||| || || |||||| || ||||| || ||| ||| Sbjct 123012 ATGAGTCGCTGTTGGTCGGGTGGGATACCTTCTTTATCTTGAATTTTCGTCTTAACGTTG 122953 Query 199559 TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACA 199618 |||| ||||||| | || || ||||| || || ||||| || || | || || ||| Sbjct 122952 TCGATCGTGTCTGACGACTCGACCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACA 122893 Query 199619 AAAATTTG 199626 |||||||| Sbjct 122892 AAAATTTG 122885 Score = 98.7 bits (108), Expect = 2e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| || || || || ||||| || || | ||||||||| | | || | || || Sbjct 122865 AGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGACCGTCC 122806 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| || ||||| || || | |||||||||||| || |||||| || || Sbjct 122805 TCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCT 122746 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| || ||| |||| ||||||| | ||||| || | |||||| || Sbjct 122745 TGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTT 122686 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | || ||||||||||| || Sbjct 122685 TTTCCGGTCAAGGTCTTCACAAAAATCTG 122657 >seq2521 Length=135005 Score = 100 bits (110), Expect = 7e-16 Identities = 90/113 (80%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| ||||| || || ||||| || |||| ||||||||| | | || | ||||| Sbjct 57587 AGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCC 57646 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTC 199530 || |||||||| ||||||||||||||||| |||||||| ||| ||| ||||| Sbjct 57647 TCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGAGGAATGCCTTC 57699 >seq4836 Length=199183 Score = 93.3 bits (102), Expect = 1e-13 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 ||||||||| ||||| || |||||| | || || || ||||||||||| ||||| | Sbjct 162949 CCTTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAA 162890 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | | |||||||||||| ||| ||| ||||| ||||| || || |||||| | Sbjct 162889 TCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGT 162830 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 ||| ||||| | | || || || | ||||| ||||| || ||||| || || || | Sbjct 162829 CGATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 162770 Query 199620 A 199620 | Sbjct 162769 A 162769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178848325970017