Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2228 147 2e-30 seq3060 100 3e-16 >seq2228 Length=283306 Score = 147 bits (162), Expect = 2e-30 Identities = 184/249 (74%), Gaps = 5/249 (2%) Strand=Plus/Minus Query 133195 TCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACC 133254 || ||||| | ||||||||| ||| || || ||||| ||||| || ||||| | | Sbjct 201243 TCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCCTCTGGAATC 201184 Query 133255 TGCACTTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGC 133313 || ||||| || ||| ||||| | |||||||||||||||||||||||| ||||| Sbjct 201183 TGAACTTCGCC-GCTAAAGCGCTCAAGAAGATTTTCGTTGACGATGCCGTCGGAAGCGGC 201125 Query 133314 GAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTC---CCA 133370 || ||||||| ||| || |||||| | ||| || | ||| || | || || ||| Sbjct 201124 AAAGAAGGCCAACACATGAGAGATGAAGTAGCGTTCATCGTCATTTAGTCGATCATTCCA 201065 Query 133371 GTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTT 133430 |||| | ||| ||||||| || | ||| ||| ||||||| || ||||||||||| || Sbjct 201064 GTCGTGAAGGTCTTTGGACAAATCGATCTCTTCGGCGGTCCAGAAGGACGCCTCGGCCTT 201005 Query 133431 TTTGTACAT 133439 |||||||| Sbjct 201004 CTTGTACAT 200996 >seq3060 Length=205498 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || | || ||||| || || || | || |||||| | | Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| |||| ||||| | || ||||| || || || ||||||| Sbjct 122942 GACACGATCGACAACG-TTAAGACGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCA 123000 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||| ||||| | || || || ||||| || || | || || ||| ||| || || Sbjct 123001 ACAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAA 123060 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| |||||| || ||||||||||| || | ||| | |||||| Sbjct 123061 CATCCAGAAGGAAAGCACTCTGCATTTGGTATTGAGATTGCGCGGCGGC 123109 Score = 86.0 bits (94), Expect = 6e-12 Identities = 152/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || ||||| ||||| | || || ||| | | Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | ||| || || | ||||| ||||||||||| | ||||| Sbjct 122714 GACACAATCGACAACG-TCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCA 122772 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| | |||| || ||||||||||| || |||| ||||| || |||||||| Sbjct 122773 GCAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTACAA 122832 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 ||| || || || | || |||||| | || || || || Sbjct 122833 CATTCAGAAAGAGTCTACACTGCATCTCGTCCTTCGCTT 122871 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/218 (69%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38254 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCGACAGCGTGC 38313 |||| || || |||||||| || || ||||| |||| || || || |||| | | | Sbjct 122436 TCGTCAAGACTCTCACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCG 122495 Query 38314 A-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTC 38372 | |||| | ||| || || | || || ||||| || || | || || || || | Sbjct 122496 ATAACG-TGAAAACCAAGATTCAGGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTG 122554 Query 38373 ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAG 38432 |||| ||| |||||||| || || || | ||||| ||| || || |||||||||||| Sbjct 122555 ATTTTCGCTGGCAAACAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAG 122614 Query 38433 GAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| | || || ||| | || || ||| | |||| || Sbjct 122615 GAATCTACTCTCCATCTTGTCCTCCGTCTCCGAGGTGG 122652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500142470771840