Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq650 461 1e-124 seq1222 152 7e-32 seq3934 98.7 1e-15 >seq650 Length=49892 Score = 461 bits (510), Expect = 1e-124 Identities = 986/1457 (68%), Gaps = 21/1457 (1%) Strand=Plus/Minus Query 6695 ACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCCCTC 6754 || |||| ||||| || ||||| |||||||| | || | ||| || || ||| | Sbjct 4905 ACGTTCATGATACCGTTGGCATCGACATCGAAAGTGACCTCAATCTGAGGAACACCACGT 4846 Query 6755 GGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCCTTC 6814 || || | ||||| || || | || ||| |||| || || |||| ||| | | Sbjct 4845 GGGGCAGGAGGAATGCCAGTAAGTTCGAATTTACCGAGCAAGTTGTTGTCCTTGGTGCGG 4786 Query 6815 TTACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCTTGTGCCGTTGAG 6874 ||||||||||||| || || | ||| || |||| || || || || ||| Sbjct 4785 GTACGTTCACCTTCGTACACCTGAATCAAGACACCAGGCTGGTTGTCCGCGAAAGTAGAG 4726 Query 6875 AAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTCATAATA 6934 || | | ||||| | ||| || || || || | | || | || ||||| | | Sbjct 4725 AAAGTCTCGGACTTCTTGGTTGGGATAGTAGTGTTACGCTTGATGAGAGGAGTCATGACA 4666 Query 6935 CCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTCCAAGAGTAACAGGTC-TTG 6993 ||||| |||||||| || | || ||||| | || || | || | | || ||| Sbjct 4665 CCACCAGCAGTTTCGATACCCAAGGAGAGAGGGGCGACATCGAGAAGGAGGATTTCGTTG 4606 Query 6994 AACAGATTCGTTCCCTT--CACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCGTATGCG 7051 | || | | |||| | | ||| || |||||||| | || || || ||| Sbjct 4605 GTCGACTTGGAAGAGGTGTCACCAGACAGGATAGCAGCTTGGACAGCGGCGCCATAAGCG 4546 Query 7052 ACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCCGATAAC 7111 || |||||||||||||| || | || || | || || ||||| || |||| || | | Sbjct 4545 ACAGCCTCATCGGGGTTGATGGACTTGTTAGGCTCCTTTCCGTTGAAGAAATCGGAAACC 4486 Query 7112 ATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTCACTTTC 7171 || | || || || ||||| || || || ||||||||||| || ||||| | || Sbjct 4485 ATCTTCTGGATCTTTGGGATACGAGTAGAACCACCGACCAAGACAATTTCGTGGACGGAG 4426 Query 7172 GATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTACGGAAC 7231 || || || ||||| | || || || |||||||| ||||| |||||| Sbjct 4425 GACTTGTCAATCTTGGCATCACGGAGGACACGCTCGACAGGCTCCATGGTGGAACGGAAG 4366 Query 7232 AAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCG 7291 | |||| || || || ||||| || |||||||| ||||| || ||||| || | || Sbjct 4365 AGGTCCTGGCAAAGCTCTTCAAAGCGGGCACGGGTGATGGAAGTGTAGAAGTCGATACCC 4306 Query 7292 TCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCG 7351 ||| | | || ||||| ||||||| || || |||| ||||| | || ||||| || Sbjct 4305 TCGAAAAGAGAGTCAATCTCAATGGAAGTCTGGGCCGCAGAAGAGAGAGTGCGCTTAGCA 4246 Query 7352 CGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTA 7411 ||||| || || ||||| | ||| ||||||||||| | || | ||||| ||| ||||| Sbjct 4245 CGCTCGCAAGCAGTTCGAAGACGGCGAAGGGCACGGGCATTGCTGGAAAGATCCTTCTTG 4186 Query 7412 TGTTTACGTTTAAACTC-TTCAGAGAAGT-GTCG--AAGGAGTCTCGAATCGAAATCTTC 7467 || || || |||||||| || | | |||| || | |||| | | ||||| || || Sbjct 4185 TGCTTGCGCTTAAACTCATTGACA-AAGTGGTTGACAAGGCGGTT---GTCGAAGTCCTC 4130 Query 7468 ACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTT 7527 |||||||||||| || || || || || | |||||||| ||||||||| | |||||| | Sbjct 4129 ACCACCCAAGTGAGTGTCACCAGCAGTGGACTTGACTTCGAAGATACCTTCCTCAATGGT 4070 Query 7528 TAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGT 7586 || | ||||||||||| ||||||||||||| ||| || || | || || ||| || Sbjct 4069 CAAGAGGGAAACATCAAAAGTACCACCACCCAAGTCGAAGATCAAAACATTGCGT-TCAC 4011 Query 7587 CGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATAC 7646 | || ||||| || | ||| || || || || || || || ||||| || || |||| Sbjct 4010 CTTCAACCTTCTTGTCCAAACCATAAGCAATGGCGGCAGCAGTGGGTTCGTTGATGATAC 3951 Query 7647 GAAG-ACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCG 7705 |||| ||| || || || ||||| | ||||| || || ||||| || || |||||| Sbjct 3950 GAAGCACA-TTGAGACCGGCAATCAGACCGGCATCCTTGGTAGCTTGACGCTGGGAATCG 3892 Query 7706 TTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCC 7765 || |||||||| || || || || || || | |||| | |||||| || ||||| Sbjct 3891 TTGAAGTAGGCAGGAACAGTGACAACAGCATTGTTGACAGTTCCACCGAGGTAAGATTCG 3832 Query 7766 GCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTC 7825 || | ||| |||| ||||| | ||||||||||| |||||||||| | ||||| || Sbjct 3831 GCAGTCTCTCTCATCTTGGTCAAGACCATCGATGAGATCTCTTCAGGAGTGAACTGCTTG 3772 Query 7826 GTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTTA 7885 || ||||| || || || | || ||| | || || |||| | | || | ||| Sbjct 3771 GTCTCACCCTTGAATTCGATTTGAATGACAGGCTT-GCCGC--CCTTGTCAATGATCTTG 3715 Query 7886 TACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAGA 7945 | | | | |||||||| | || |||| || | || || | ||||||||| Sbjct 3714 AAGGGGAAGTGCTTCATATCAGCCTGCACCTCAGCATCGGCGAATTTACGACCGATAAGA 3655 Query 7946 CGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCC 8005 || || || || || || ||||| | || |||||||| ||| || || || || || Sbjct 3654 CGTTTGGCGTCGAAGACGGTGTTGGTAGGATTCATGGCGACTTGATTTTTGGCGGCATCT 3595 Query 8006 CCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCT 8065 ||||| ||||| || || ||||| || || ||| |||| || || ||||| || || Sbjct 3594 CCGATCAGACGCTCGGTA---TCCGTGAAAGCAACGAACGAGGGAGTAGTTCGGTTGCCC 3538 Query 8066 TGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTT 8125 || ||||| || || ||||| | ||||| | | ||| || || || || || || Sbjct 3537 TGATCGTTGGCGATGATTTCGATTCGGTCATCACGGTAGATACCCACACAGGAGTATGTG 3478 Query 8126 GTTCCTAAATCAATACC 8142 || || ||||| ||||| Sbjct 3477 GTACCCAAATCGATACC 3461 >seq1222 Length=133609 Score = 152 bits (168), Expect = 7e-32 Identities = 366/546 (67%), Gaps = 17/546 (3%) Strand=Plus/Minus Query 7244 AGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAA 7303 || ||||||||||||||||| || || | | ||| || | |||||| | | ||| Sbjct 104075 AGATCCTCAAAACGTGCACGAGTGATCTGGGAGTTGAAGTCTTCTCCGTCGAAAAGGGAA 104016 Query 7304 TCAATTTCAATGGTTGTTTGTGC--CGTCGAAGATAACGTTCGCTTTGCGCGCTCACACG 7361 ||||| || | || || || | ||| | | | | || ||||| || ||||| || | Sbjct 104015 TCAATCTCGACAGTGGTCTGAGTAGCGTTGGAAAGA--GTGCGCTTGGCACGCTCGCAAG 103958 Query 7362 CCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTT 7421 | ||||| | ||| || ||||| | | | |||||| | ||| ||||| || || | Sbjct 103957 CAGTTCGGAGACGGCGGAGGGCTCTGGCATCACCGGAGAGATCCTTCTTGGTCTTTCGCT 103898 Query 7422 TAAACTCTTCAGAGAAGTG-TCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGT 7480 ||||||| ||| || |||| | || | | ||| || || | |||||| | || Sbjct 103897 GGAACTCTTTCTTGAAATGATCGA-GAAGGTTGGTATCAAAGTCCTGACCACCAAGATGG 103839 Query 7481 GTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACA 7540 ||||| || || || || || || |||| || || | ||||| | | |||||| Sbjct 103838 GTATCACCAGCAGTAGCCTTAACAGTGAAGACGCCACCCTGGATGTTGAGGAGAGAAACA 103779 Query 7541 TCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG-TCGTCTT-TGTTCT 7598 || || ||||||||||||| || ||||||| || || ||| || | || | ||| Sbjct 103778 TCGAAAGTACCACCACCCAAATCGTAAATGAGAACATT----TCGCTCCTTTTCAGATCT 103723 Query 7599 T-----ATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACA 7653 | | | | ||||| || || || || || || || || || |||||||| || Sbjct 103722 TCCAGAACCCAAGCCGTAAGCAATGGCTGCAGCAGTGGGCTCGTTGATAATACGGAGGAC 103663 Query 7654 GTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTA 7713 ||||| |||||| || | | ||||| || || ||||| || || ||||| ||||| Sbjct 103662 GTTCAAGCCAGCGATGGCACCGGCATCCTTGGTTGCTTGACGCTGGTTGTCGTTGAAGTA 103603 Query 7714 GGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATC 7773 |||||| || || | ||| || | | ||||||||| | || | | ||||| | || Sbjct 103602 GGCCGGTACGGTGATGACAGCCTTGGAGACTTTCTTTGCAAGCTTGGTCTCCGCAACCTC 103543 Query 7774 TTTCAT 7779 |||||| Sbjct 103542 TTTCAT 103537 >seq3934 Length=413549 Score = 98.7 bits (108), Expect = 1e-15 Identities = 356/552 (64%), Gaps = 15/552 (3%) Strand=Plus/Plus Query 105529 GGACAAAACAATGACCAATTACCATCGGATTCAACGCGTTTCATGAACAAATCTGGAATC 105588 ||||||||||| | ||||| || | ||||| || |||||||||| ||| || || Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTC 408849 Query 105589 CACATGGCTGAAAAGAGGTCTCGACACCTCGCCTCTTCATCACCTTGATTCAAACGAATT 105648 || | || ||||| || || || | || || | || || || ||| | Sbjct 408850 CAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCGTGGTTTTTACGGAGA 408909 Query 105649 TCGAGAAAATCGAGAATATCGGCGTGCCATGGTTCTAAATAGACTGCAAT------AGAC 105702 || | ||| |||| ||||||| |||||| ||||| | ||| | |||| || | Sbjct 408910 TCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGC 408969 Query 105703 CCTTTACGACGCCCCGCTTGATTGACATATCTTGCGGTTGAGTTATACACTCGTAACATT 105762 | ||| | ||| | |||| | |||||||| || || |||| | || || | ||| Sbjct 408970 CGTTT--GTTGCCAC-CTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATG 409026 Query 105763 GGAATAATACCATCGGATGTTCCATTTGTTCCACGAATATGTGATTTATTTGCACGTACA 105822 || | || || | || | || |||||||| ||| | || | | || || | | Sbjct 409027 GGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATA 409086 Query 105823 TCGTGAACGTGTAACCCAATACCCCCAGCCCACTTACTGATACGCGCACACTCTTTTACT 105882 || | | | || ||||| ||||| ||| || | || || |||| Sbjct 409087 CGATGGATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGA 409146 Query 105883 GTATCGTAAATACCGTCGATACTATCTTCCTTATTCGCAATCAGGAAACACGATGACATT 105942 |||||||| ||||| ||||| ||||||||||| | |||| || ||||| || | ||| Sbjct 409147 GTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATC 409206 Query 105943 TGTGGTCTGGGTGTACCAGCATTGAACAGAGTTGGTGTTGCATGAATGAACAAACCTTTC 106002 |||||| ||||| || || ||||| ||||| || | ||||| || | ||| |||| Sbjct 409207 TGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATG--TGTA-AAATATTTC 409263 Query 106003 ---GATAACGCTTCGTATGTTTCCAGGACGTGATCAATATCGTGTCCATGAATACCAATA 106059 || | | | || ||||| | | | ||||| || | |||||||| |||| Sbjct 409264 TGAGACATCAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACC 409323 Query 106060 GCGACGCGCATA 106071 || || |||||| Sbjct 409324 GCAACACGCATA 409335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635094287134840