Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq3934 122 1e-22 seq4417 100 3e-16 seq4759 96.9 4e-15 seq2228 84.2 3e-11 >seq3934 Length=413549 Score = 122 bits (134), Expect = 1e-22 Identities = 397/610 (65%), Gaps = 9/610 (1%) Strand=Plus/Plus Query 110531 CCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGG 110590 |||| ||||| | ||||| || |||| | || ||| | || ||||| || | || Sbjct 408743 CCTCGAATTCATCACCGTAAACGTCAGCTAATCCTGACGCTTCGTTTGGACAAAACAAGG 408802 Query 110591 ACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGA 110650 ||||| || || |||||||| |||||||||||| || || |||| | || || Sbjct 408803 TCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTCCAAAGAGCAAGGA 408862 Query 110651 AAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCA 110710 | || |||||| | | || || | || ||||| || || || ||||| || | Sbjct 408863 AGAGATCACGGGCTCTTACTTCCTCCTTTCCGTGGTTTTTACGGAGATCTAAAAACTCGA 408922 Query 110711 TGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGG----ATCCCTTACGACGACCC 110766 |||||| |||||||| ||||| ||||| | || | || | || | | | || Sbjct 408923 AGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTG-CCA 408981 Query 110767 GCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCG 110826 | |||| ||||| || ||||| || ||||| | |||||| || | ||||| | Sbjct 408982 CCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTA 409041 Query 110827 GATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATA 110886 || || ||||| || ||| ||| | | || ||||| ||||||| | | Sbjct 409042 GAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATACGATGGATATTAAGA 409101 Query 110887 CCAATACCACCCGCCCACTTACTAATTTGTGCACA-CTCTGTGAGTGTACCATAAATACC 110945 || ||||| || || ||| ||| | || || ||| | || ||| | || ||||| Sbjct 409102 CCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCT-TTAGAGTATCGTAGATACC 409160 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 ||| || |||| |||| | |||| ||||| || || | |||||| || | || || Sbjct 409161 ATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGTTGCGGTGT 409220 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCT-TGGGACATCTTGTTGT 111064 |||||| ||||| || || || | ||||| | || | | | || |||||| || | Sbjct 409221 TCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGT-AAAATATTTCTGAGACATCAGATTAT 409279 Query 111065 ATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGCATGAACA 111124 | || |||| || | |||| || ||||| |||| ||||| ||||| | || Sbjct 409280 ACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACGCATAATCA 409339 Query 111125 TATATTGAGG 111134 | | ||| || Sbjct 409340 TGTGTTGCGG 409349 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 110268 ATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC 110327 || ||||||| |||| | ||||| ||||| | |||||| || | ||||| | Sbjct 408428 ATCGACATATGTGGGCAAAGCAAGGGACGCCAAATTGCAAACTGCGACTTCGTCCGGCGC 408487 Query 110328 GGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTG 110387 |||||| || | |||||||| ||||||||||| ||| ||| || | ||| || || Sbjct 408488 GGTGTACTCGATGATTTCCGTGCACAAGTTGGAGCTCCGAATAGTTCCAAGGTTTTTTTG 408547 Query 110388 ATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTG 110447 || ||| |||||| ||||| ||||| |||||| | ||| | ||||| || || || Sbjct 408548 GTTACTCTTGCGGTTGCACGCATCTTTATAAAGCATGAAGGGGTTCCCAGTCTCTGTTTG 408607 Query 110448 TGACTTGAGAATGGCCTTCCA 110468 | || | ||| || | ||| Sbjct 408608 AGCCTCCAAAATAGCATACCA 408628 >seq4417 Length=643678 Score = 100 bits (110), Expect = 3e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 136709 CGTTCTTATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGA 136768 || || ||||||||||||||||||||||||||||| |||||||||||||| || |||||| Sbjct 592549 CGGTCCTATAGCTCAGTTGGTTAGAGCGTGGTGCTAATAACGCCAAGGTCGCGAGTTCGA 592490 Query 136769 GCCCCGTTGGGAACA 136783 || |||||||| || Sbjct 592489 CCCTCGTTGGGACCA 592475 >seq4759 Length=494668 Score = 96.9 bits (106), Expect = 4e-15 Identities = 220/327 (67%), Gaps = 8/327 (2%) Strand=Plus/Minus Query 11674 TTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGT 11733 ||||| | |||||||||||| |||||||| | ||| ||||| || || || | Sbjct 212308 TTACCAATAGCGTCAATCTCGTCGATGAAAATGATGCACGGGGTATTCTTTCGCGCAGTT 212249 Query 11734 TCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCG 11793 | ||||| ||||| || || | |||||||| || |||||||| ||||| | | Sbjct 212248 GCAAAAAGATCACGCACGCGAGATGGACCAACACCGACAAACATCTCCACGAATTCAGAA 212189 Query 11794 GCA-GAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGT 11852 || |||||| | ||| ||||| || |||||||| |||| || || | || Sbjct 212188 CCACTGACACTGTA-GAAAGGAACGCCCGATTCACCAGCTGTGGCCTTGGCCAGCAACGT 212130 Query 11853 CTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA---CT 11909 |||||| ||||| || | || | | | || ||||| || ||||| |||||| || Sbjct 212129 CTTACCGGTACCCGGGGGTCCTGATAAGATAGCACCACGAGGAATCTTCGCACCAAGCCT 212070 Query 11910 TCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 | || | ||||||| |||||||||||| || | ||| || ||| ||||||| Sbjct 212069 TTGGAACT---GCTCAGGTTTCTTGAGGAAGCTAACGAATTCCATAATTTCAACCTTGGC 212013 Query 11970 GGAGTCGATACCCTCAACATCGGTGAA 11996 ||| || || |||| || | ||| Sbjct 212012 TTCGTCCATGCCAGCAACGTCAGAGAA 211986 >seq2228 Length=283306 Score = 84.2 bits (92), Expect = 3e-11 Identities = 163/237 (69%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 || ||||| |||| ||| |||||||| || ||||| || | | |||||||| |||||| Sbjct 201894 TAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGATGTTATCCATA 201835 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAG-ATTGGTGGTTGACCAACTTGTTTC-AGAAGAC 119325 |||||||| || || ||| || || | | | |||| |||| | | || || | Sbjct 201834 AAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTTGCCCAA--AGCAACAAGCAGTC 201777 Query 119326 GATCGGAGACATACTCGATATATTCGGACATCTTTTCCGAATTCATACCTATGAGATTAC 119385 |||| ||| |||||||||||| | |||| | | ||||| || | || || Sbjct 201776 TGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGCGTTCATGCCAAGAAGGGCAC 201717 Query 119386 ACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGG 119442 | || |||||||| | ||| | |||||| ||||| || || ||| | | ||||| Sbjct 201716 ATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCTGTGATGATGG 201660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588940285967800