Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq650 154 1e-31 seq1275 105 5e-17 seq3060 104 2e-16 >seq650 Length=49892 Score = 154 bits (170), Expect = 1e-31 Identities = 356/533 (67%), Gaps = 4/533 (1%) Strand=Plus/Plus Query 549997 AGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGA 550056 |||||| ||||| || |||||||| ||||| ||| | | | ||| | | || Sbjct 3460 AGGTATCGATTTGGGTACCACATACTCCTGTGTGGGTATCTACCGTGATGACCGAATCGA 3519 Query 550057 AATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAAC 550116 ||| || ||||| ||||| || ||| |||||||||| || | ||| |||||||||| || Sbjct 3520 AATCATCGCCAACGATCAGGGCAACCGAACTACTCCCTCGTTCGTTGCTTTCACGGATAC 3579 Query 550117 TGAACATTTAGTTGGTGATGCAGCAAAATATCAAGCCACTGGTAATCCTACCAATACTAT 550176 || | | | | || ||||| || ||| |||||| | | ||||||||||| || | Sbjct 3580 CGAGCGTCTGATCGGAGATGCCGCCAAAAATCAAGTCGCCATGAATCCTACCAACACCGT 3639 Query 550177 TTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATAT 550236 || || || |||||| | || || | | || ||| | || ||||| ||||| Sbjct 3640 CTTCGACGCCAAACGTCTTATCGGTCGTAAATTCGCCGATGCTGAGGTGCAGGCTGATAT 3699 Query 550237 GAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATT-GAAGCTACTC 550295 |||||| | || ||| | || || | || || ||| ||| || | | | Sbjct 3700 GAAGCACTTCCCCTTCAAGATCATTGACAAGGGCGGCAAGCCTGTCATTCAAATCGAAT- 3758 Query 550296 ATGAAGGATCTG-TTAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAA 550354 | |||| | | || || || | || ||| | || ||||| ||||| || | || Sbjct 3759 -TCAAGGGTGAGACCAAGCAGTTCACTCCTGAAGAGATCTCATCGATGGTCTTGACCAAG 3817 Query 550355 ATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTA 550414 |||| | | || ||| ||| | ||| | || | |||| || | ||||| Sbjct 3818 ATGAGAGAGACTGCCGAATCTTACCTCGGTGGAACTGTCAACAATGCTGTTGTCACTGTT 3877 Query 550415 CCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGA 550474 || || || || || || || || ||||||||||| || ||||| || | ||||| || Sbjct 3878 CCTGCCTACTTCAACGATTCCCAGCGTCAAGCTACCAAGGATGCCGGTCTGATTGCCGGT 3937 Query 550475 CTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 || ||||| |||||||| ||||| ||||| |||||||| || |||| ||||| Sbjct 3938 CTCAATGTGCTTCGTATCATCAACGAACCCACTGCTGCCGCCATTGCTTATGG 3990 >seq1275 Length=199436 Score = 105 bits (116), Expect = 5e-17 Identities = 100/128 (78%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 550409 ACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATT 550468 || || || || ||||| |||||||| || ||||||||||| || ||||| || | ||| Sbjct 42043 ACGGTCCCTGCTTATTTCAATGACTCCCAGCGTCAAGCTACCAAGGATGCCGGTCAGATT 42102 Query 550469 GCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGA 550528 ||||| || || || ||||| || |||||||||| || ||||| || ||||| || || Sbjct 42103 GCTGGTCTCAACGTCCTTCGCGTTGTCAATGAACCCACCGCTGCAGCCCTTGCCTACGGT 42162 Query 550529 CTTGATAA 550536 ||||| || Sbjct 42163 CTTGAGAA 42170 >seq3060 Length=205498 Score = 104 bits (114), Expect = 2e-16 Identities = 153/212 (72%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTC--TTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| |||||||| || ||| ||| ||||| || || ||||||| ||||| Sbjct 122644 GAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGG--ATGTTATAATCAGAGAGAGTG 122587 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | ||| ||||||||||| || || ||||| | | ||||||||| ||||| || || Sbjct 122586 CGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCC 122527 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAG 563432 || ||||| ||||| || ||| || || || ||||| | | || | | ||||| Sbjct 122526 TCCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAG-GATTCAACCTCGAG 122468 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGA 563464 ||| | ||| || || || ||||| || |||| Sbjct 122467 AGTGATAGTCTTTCCCGTGAGAGTCTTGACGA 122436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029039457241990