Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq3934 107 4e-18 seq2228 102 2e-16 >seq3934 Length=413549 Score = 107 bits (118), Expect = 4e-18 Identities = 615/967 (64%), Gaps = 35/967 (4%) Strand=Plus/Plus Query 212688 AGATGTAGGTTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCT 212747 ||||| | ||| || || ||| || || ||||||| | ||| |||||| ||||| | Sbjct 407658 AGATGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGA 407717 Query 212748 ATGATATCTCTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGG 212807 ||||| || ||||||| |||||||| |||||| ||| |||||| ||| | ||| Sbjct 407718 ATGATGGTCCTTTGGGAGATTTCCCACACTGTCTTGTAGAGAGCTTTGATGTCTGCAGGG 407777 Query 212808 AAGCCGGGGATGTTCTGCACAGACCCCCTGTGTATGGTCAGCTGCAG--GCGCATGTCCT 212865 | |||||||||||| || || || | || | | ||| | ||||| | Sbjct 407778 ATATTGGGGATGTTCTGGACTGAACCGCCGTCAGCAATAA--TGCGGTTCTTCATGTTGT 407835 Query 212866 CGTTCCAGAGGCCCCTGGTC-TCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAG 212924 | ||||||| || | || | || ||||| || || ||||| | ||||| Sbjct 407836 CTGACCAGAGG-CCGAGATCAACAAGATCCTTGAGAAGCCATGGATTGACGACTTGGAAT 407894 Query 212925 TCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTG 212984 || |||| || |||| | ||| | |||||| ||||| ||||| | | |||||| Sbjct 407895 TCGCCTGCAAGAACCCGGCGAGAGTAGATGTTTGATGTGTATGGCTCAAAACATTCGTTG 407954 Query 212985 TTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACTGTTCCTC 213044 || || ||||| |||||||| || ||||| ||||| || || | |||||| | Sbjct 407955 AAACCGAGGATCTGACTCGTGCTGGCAGTAGGCATCGGAGCAACAAGTAAACTGTTGCGT 408014 Query 213045 ACTCCGTGCTCGCCGATGAGGCGCC--GAAGCTCTGCCCAGTCCCATCTGCCAGACAGGT 213102 || ||||| | |||| | | | || | | | |||||||||| | ||| Sbjct 408015 ACACCGTGTTTTGCGAT-ATCCTTCTTGAGGGTGT-CCCAGTCCCAAAGGTCAG------ 408066 Query 213103 CCTCGTCCTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCT 213162 ||| ||||||||||||| || ||||||| | || || ||||| || | Sbjct 408067 --TCG-GAGTCACGTTCCACATATCGTACTGCAAAGTACCCTTTGAAACGGGAGAACCTT 408123 Query 213163 GGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGT 213222 |||| || || |||| ||||||| | || || ||||| ||| || || | Sbjct 408124 CATAAGTTTCATAAGGACCATCAACCTTGGCTATGTCACAAGACGCGGTCAGAGCTGCAT 408183 Query 213223 AGTAGATGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCA 213282 |||||| ||||| || || | | || | || ||| ||||| || || || |||| Sbjct 408184 GGTAGATTGTTTCGAAGATTTGAATATTCAACTGCTTTGCCTCAGGCGAGTCAAACGGCA 408243 Query 213283 TCATCATGCG-TTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGT 213341 || ||| |||| ||||||| || ||||| || || | | || || | || Sbjct 408244 ATCGCA-GCGCAAGGAAAGCATCAGCGAGTCCCTGCACACCCACCGCAATAGGACGATGA 408302 Query 213342 CTCAGGTTAGACTTGGAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 | | |||| ||| | || | ||| || ||| ||| ||||||||||| Sbjct 408303 CGGAAGTTACTCTTCCTGGCTTCTGGGACGGGATAGTGATTGTTGTCAATGATCTTGTTT 408362 Query 213402 AGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTA--CTCGTGATTGAACACGTAGC 213459 | |||| | |||| ||||| | || | | ||| | | || | || Sbjct 408363 AAGTTGAGAACAAGGACTTGTGTGACTT----CATGCAATCTCCCAAAGTCATAC-TCGC 408417 Query 213460 CCCCGTC---CTGCACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCT 213516 ||| | | | ||| | |||| || | | |||| |||||||| || || | Sbjct 408418 CCCGGACAGGATCGACATATGTGGGCAAAGCAAGGGACGCCAAATTGCAAACTGCGACTT 408477 Query 213517 CCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCA 213576 | | | | |||||||| ||||| || ||||||| |||| || || || || || | Sbjct 408478 CGTCCGGCGCGGTGTACTCGATGATTTCCGTGCACAAGTTGGAGCTCCGAATAGTTCCAA 408537 Query 213577 GGTTCTGGTGGTTTGACT-TTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCC 213634 |||| | ||||| ||| ||||| | ||| | ||| || || |||||| ||||| ||| Sbjct 408538 GGTTTTTTTGGTT--ACTCTTGCGGTTGCACGCATCTTTATAAAGCATGAAGGGGTTCCC 408595 Query 213635 GGTCTCT 213641 |||||| Sbjct 408596 AGTCTCT 408602 Score = 95.1 bits (104), Expect = 2e-14 Identities = 196/286 (69%), Gaps = 7/286 (2%) Strand=Plus/Plus Query 213780 GGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGAC 213838 ||||| | | | |||| || |||| | |||| || | || ||||||||| || ||| Sbjct 408790 GGACAAAACAAGGTCCAATCGCCGTTCTTCTCA-ACCCGCTTCATGAACAGATCGGGGGT 408848 Query 213839 CCACAGCGCGGTGAACAGGTCCCTGG-TCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||| || || ||| || || | || || | || || ||| ||| |||||| || | Sbjct 408849 CCAAAGAGCAAGGAAGAGATCACGGGCTCTTACT-TCCTCCTTTCCGTGGTTTTTACGGA 408907 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 |||||| ||| || ||||| || | |||||| || || | || |||||||||||||| | Sbjct 408908 GATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAG 408967 Query 213958 GCC---TCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 ||| | ||||| || ||||| || | || |||| |||| || || | || Sbjct 408968 GCCGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGG 409027 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCC 214060 | || | ||||| || ||||| ||||| || || || ||||| Sbjct 409028 GGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCC 409073 >seq2228 Length=283306 Score = 102 bits (112), Expect = 2e-16 Identities = 173/250 (69%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||| ||||||||| | |||||| | Sbjct 201245 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCAACGGGCCTCTGGAA 201186 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| ||||| | || | ||| || ||||| || ||||| || || || ||||| | Sbjct 201185 TCTGAACTTCGCCGCTAAAGCGCTCAAGAAGATTTTCGTTGACGATGCCGTCGGAAGCGG 201126 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGA---GAGCATTCC 48605 |||||||||| | ||||| | ||| | ||| || | || | | || |||||| Sbjct 201125 CAAAGAAGGCCAACACATGAGAGATGAAGTAGCGTTCATCGTCATTTAGTCGATCATTCC 201066 Query 48606 AGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTT 48665 || | || | ||||||| || || | ||||| | |||||||||||||| || | Sbjct 201065 AGTCGTGAAGGTCTTTGGACAAATCGATCTCTTCGGCGGTCCAGAAGGACGCCTCGGCCT 201006 Query 48666 TTTTGTACAT 48675 | |||||||| Sbjct 201005 TCTTGTACAT 200996 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931476314179840