Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2228 125 1e-23 seq3934 109 1e-18 >seq2228 Length=283306 Score = 125 bits (138), Expect = 1e-23 Identities = 293/445 (66%), Gaps = 7/445 (2%) Strand=Plus/Plus Query 25879 CGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATC 25938 || ||||| |||||||| || || || || ||||| ||||| || || || || | || Sbjct 201458 CGCCTGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATT 201517 Query 25939 TTCTGGCTCAAGCAGAAGGGGACC-ATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAG 25997 |||||| | ||| | | | || | |||||||| || ||||| || || | || Sbjct 201518 TTCTGGTTGAAGAA-ACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTC 201576 Query 25998 CAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCA 26057 | | |||||||||||||||| || ||||||||||| |||| | | |||| | | ||| Sbjct 201577 CCGTGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTC---CCACCTCCGCCA 201633 Query 26058 CAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGA 26117 || | | |||| | ||||||| |||||| || ||||| |||||||| Sbjct 201634 TCGCCCCGGCCCTTCGGCCGTTGAGGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGA 201693 Query 26118 GTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCA 26177 || | ||||||||| || |||||| |||| Sbjct 201694 ATTCTTAACTGATGCTCTTCCATGTGCCCTTCTTGGCATGAACGCCAAGCTCATGTGCCA 201753 Query 26178 ATACATTGAGTATGTGGCCGACCATCTGC-TGTGCCAGCTGGGACTCGCCAGACTCTACA 26236 ||| || |||| ||| |||||| |||| ||| | |||| | | |||||| Sbjct 201754 ATATATCGAGTTTGTTGCCGACAGACTGCTTGTTGC-TTTGGGCAACAAAAAGTTCTACA 201812 Query 26237 GTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCT 26296 | | | ||||| || ||||||||||| ||||| ||||||| || ||||||||||||| Sbjct 201813 ATGCCACCAACCCATTTGACTTTATGGATAACATCTCGTTGGCCGGCAAGACCAACTTCT 201872 Query 26297 TTGAAAAGAGGGTCGGCGACTATCA 26321 | || ||| |||| || || || || Sbjct 201873 TCGAGAAGCGGGTTGGTGATTACCA 201897 Score = 98.7 bits (108), Expect = 2e-15 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || ||| |||||||||||||||| | || |||||||||||||||||| ||| || Sbjct 200987 ATCTGGCAGATGTACAAGAAGGCCGAGGCGTCCTTCTGGACCGCCGAAGAGATCGATTTG 201046 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGT-- 25594 |||| ||| | ||| |||| | | || | || ||||| | | | ||| | Sbjct 201047 TCCAAAGACCTTCACGACTGGAATGATCGACTAAATGACGATGAACGCTACTTCATCTCT 201106 Query 25595 -ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGA 25653 | |||||||| |||||||| || || || || || || ||||| ||||| ||| | Sbjct 201107 CATGTGTTGGCCTTCTTTGCCGCTTCCGACGGCATCGTCAACGAAAATCTTCTTGAGCGC 201166 Query 25654 TTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGAT 25706 || | | | ||||| ||| |||||| || ||||||||||||||||| Sbjct 201167 TTTAGCGGCGAAGTTCAGATTCCAGAGGCCCGTTGCTTCTACGGTTTCCAGAT 201219 >seq3934 Length=413549 Score = 109 bits (120), Expect = 1e-18 Identities = 312/472 (66%), Gaps = 16/472 (3%) Strand=Plus/Plus Query 222032 ACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGC 222091 |||| || |||||| || || ||| |||| || || | |||||||| | || | Sbjct 408823 ACCCGCTTCATGAACAGATCGGGGGTCCAAAGAGCAAGGAAGAGATCACGGGCTCTTACT 408882 Query 222092 TCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGC 222151 |||||| |||| |||||| | ||||| |||||||| || || || | |||||| || Sbjct 408883 TCCTCCTTTCCGTGGTTTTTACGGAGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGT 408942 Query 222152 TCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCAC-CATC---CT 222207 || ||||| | ||| | ||||| || || ||||||||||| || || || ||| || Sbjct 408943 TCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCACCTTGGTCGACATATCGAGCT 409002 Query 222208 CTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCC 222267 | | ||| |||| || || | || || | |||||| || ||||| || || Sbjct 409003 GT----ATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTAGAGGAGCCGTTTGTTCC 409058 Query 222268 CTTAATGTACGCACCGCCGGCCCTCAGGTTAC--TGG-CAGACATGCCGATACCACCGGC 222324 |||||| | ||| | | | ||| ||| | | |||||||| || || Sbjct 409059 TGCAATGTAGG---AGCCAGTCGCGCGAATACGATGGATATTAAGACCGATACCGCCAGC 409115 Query 222325 GTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCT 222383 ||| || || |||| |||||| |||| ||||| || ||| || || || || | Sbjct 409116 -TGTCTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGATACCATCGATGCTATCTT 409174 Query 222384 CCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACA 222443 |||| | | | |||||||| || | |||||| | || | | | ||||| || | Sbjct 409175 CCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGTTGCGGTGTTCCCGCGTTGAAAA 409234 Query 222444 GCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTC 222495 | ||||| || |||||||| || | ||||||||||| ||||| || Sbjct 409235 GAGTGGGGGAAGCATGTGTAAAATATTTCTGAGACATCAGATTATACGTTTC 409286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928788477173440