Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq650 138 7e-27 seq3060 111 1e-18 seq4836 87.8 1e-11 >seq650 Length=49892 Score = 138 bits (152), Expect = 7e-27 Identities = 442/682 (65%), Gaps = 19/682 (3%) Strand=Plus/Plus Query 475487 CGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAACTACT 475546 |||||| |||||||||| || ||||||||||| |||| |||||||| | || ||| | Sbjct 4223 CGTCTTCGAACTGCTTGCGAGCGTGCTAAGCGCACTCTCTCTTCTGCGGCCCAGACTTCC 4282 Query 475547 GTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAA 475606 |||| |||| |||||||| || || || || | | ||| || || | || Sbjct 4283 ATTGAGATTGACTCTCTTTTCGAGGGTATCGACTTCTACACTTCCATCACCCGTGCCCGC 4342 Query 475607 TTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCTC 475666 |||||||| |||| || ||||| | || || || || || || | || ||| Sbjct 4343 TTTGAAGAGCTTTGCCAGGACCTCTTCCGTTCCACCATGGAGCCTGTCGAGCGTGTCCTC 4402 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 | ||| | || ||||||| || ||||| |||||||| | || || ||||| || Sbjct 4403 CGTGATGCCAAGATTGACAAGTCCTCCGTCCACGAAATTGTCTTGGTCGGTGGTTCTACT 4462 Query 475727 AGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATATTTTAATGGTAAAAAGTTAAATGA 475785 | || ||||| || ||| | ||| |||| | || || || || || || Sbjct 4463 CGTATCCCAAAGATCCAGA-AGATGGTTTCCGATTTCTTCAACGGAAAGGAGCCTAA--C 4519 Query 475786 AAGT--GTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTA 475843 |||| | || || ||||| ||||| || ||||| || ||||||||||| ||||| | Sbjct 4520 AAGTCCATCAACCCCGATGAGGCTGTCGCTTATGGCGCCGCTGTCCAAGCTGCTATCCTG 4579 Query 475844 TCAGGTCAATC--------AGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTC 475895 || ||| | | || ||| ||| || || | ||| | || || | | Sbjct 4580 TCTGGTGACACCTCTTCCAAGTCGACCAACGAA-----ATCCTCCTTCTCGATGTCGCCC 4634 Query 475896 CACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATA 475955 | || || || ||| | ||||| | ||| || | |||||| ||| || | | || | Sbjct 4635 CTCTCTCCTTGGGTATCGAAACTGCTGGTGGTGTCATGACTCCTCTCATCAAGCGTAACA 4694 Query 475956 CTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTG 476015 || |||||||| ||| || || | || || |||| | || || || | || Sbjct 4695 CTACTATCCCAACCAAGAAGTCCGAGACTTTCTCTACTTTCGCGGACAACCAGCCTGGTG 4754 Query 476016 TAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAA 476075 | || || | | ||||||||| | | ||| || || || ||| || || | Sbjct 4755 TCTTGATTCAGGTGTACGAAGGTGAACGTACCCGCACCAAGGACAACAACTTGCTCGGTA 4814 Query 476076 CTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTT 476135 || | ||| || ||||||||||| || | || |||||||| ||||| || |||| Sbjct 4815 AATTCGAACTTACTGGCATTCCTCCTGCCCCACGTGGTGTTCCTCAGATTGAGGTCACTT 4874 Query 476136 TTGATATTGATGCAAATGGTAT 476157 | ||| | ||||| || ||||| Sbjct 4875 TCGATGTCGATGCCAACGGTAT 4896 Score = 136 bits (150), Expect = 3e-26 Identities = 352/534 (66%), Gaps = 7/534 (1%) Strand=Plus/Plus Query 474392 GAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAA 474451 ||||| || ||||| || || || || |||| || || || | ||| |||| || || Sbjct 3518 GAAATCATCGCCAACGATCAGGGCAACCGAACTACTCCCTCGTTCGTTGCTTTCACGGAT 3577 Query 474452 ACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACT 474511 || || | ||| || |||||||| || ||| |||||| || |||||| || || Sbjct 3578 ACCGAGCGTCTGATCGGAGATGCCGCCAAAAATCAAGTCGCCATGAATCCTACCAACACC 3637 Query 474512 ATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGAT 474571 | || || || ||| | | || |||||||| || | ||| | || || ||||| Sbjct 3638 GTCTTCGACGCCAAACGTCTTATCGGTCGTAAATTCGCCGATGCTGAGGTGCAGGCTGAT 3697 Query 474572 ATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC--AA 474629 ||| || | || || ||| | || | || || || || || || || Sbjct 3698 ATGAAGCACTTCCCCTTCAAGATCATTGACAAGGGCGGCAAGCCTGTCATTCAAATCGAA 3757 Query 474630 TACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCA 474689 | || | ||||| || || || || | || ||| | || || || ||||| || ||| Sbjct 3758 TTCAAG--GGTGAGACCAAGCAGTTCACTCCTGAAGAGATCTCATCGATGGTCTTGACCA 3815 Query 474690 AAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAATTACTG 474749 | |||| | | || || || || || || | || | |||| || | |||| Sbjct 3816 AGATGAGAGAGACTGCCGAATCTTACCTCGGTGGAACTGTCAACAATGCTGTTGTCACTG 3875 Query 474750 TTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGCAG 474809 |||| || || || || ||||| || |||||||| || || ||||| || ||||| | Sbjct 3876 TTCCTGCCTACTTCAACGATTCCCAGCGTCAAGCTACCAAGGATGCCGGTCTGATTGCCG 3935 Query 474810 GTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGGTCTTG 474869 |||| ||||| | ||||| || || ||||| || || ||||| ||||||||||| | | Sbjct 3936 GTCTCAATGTGCTTCGTATCATCAACGAACCCACTGCTGCCGCCATTGCTTATGGTTTGG 3995 Query 474870 ATAAGAATTCTGACAAAGAAGTAAATGTTTTAATCTTTGATT---GTGGAGGTA 474920 | ||||| ||| ||| |||||||| ||||| || | |||| |||| Sbjct 3996 ACAAGAAGGTTGAAGGTGAACGCAATGTTTTGATCTTCGACTTGGGTGGTGGTA 4049 >seq3060 Length=205498 Score = 111 bits (122), Expect = 1e-18 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| |||||||| || ||| ||| || | |||||||||| ||||| Sbjct 122646 CGGAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTG 122587 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| |||||||| || ||||| ||||| | ||||| ||||| ||||| || || Sbjct 122586 CGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCC 122527 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGG 480731 ||||| || |||||||| ||| || || || ||||| | | | | || || Sbjct 122526 TCCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGA 122467 Query 480732 GTAATAGTTTTACCGGTGAGAGTCTTAACGA 480762 || ||||| || || ||||||||||| |||| Sbjct 122466 GTGATAGTCTTTCCCGTGAGAGTCTTGACGA 122436 Score = 107 bits (118), Expect = 1e-17 Identities = 155/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || | ||||| ||| ||| || | || ||||| | ||||| Sbjct 122355 ACGAAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAAAGAGT 122296 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||||||||| || || ||||| || || | ||||| || |||||||| ||||| Sbjct 122295 ACGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATTCC 122236 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| |||||| || ||| || ||||||||| | | ||||| Sbjct 122235 CTCCTTGTCTTGGATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACCTCAAG 122176 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || || || | |||||| || ||||| || Sbjct 122175 GGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAAATCTG 122137 >seq4836 Length=199183 Score = 87.8 bits (96), Expect = 1e-11 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 480618 TCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTG 480677 || || || ||||||||||| ||||| | ||| || || ||||||||||| ||||||||| Sbjct 162914 TCCTCGAGCTGCTTTCCAGCGAAAATCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTG 162855 Query 480678 TCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTAATA 480737 || || || || || ||| || || || || || ||||||||| ||| Sbjct 162854 TCCTGGATTTTGCTCTTCACATTGTCGATCGTGTCGCTGGACTCCACTTCAAGGGTGATA 162795 Query 480738 GTTTTACCGGTGAGAGTCTTAACGAA 480763 || || |||||||| ||||| ||||| Sbjct 162794 GTCTTGCCGGTGAGGGTCTTGACGAA 162769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267971117072948