Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq3934 174 2e-38 seq2228 116 4e-21 >seq3934 Length=413549 Score = 174 bits (192), Expect = 2e-38 Identities = 703/1081 (65%), Gaps = 30/1081 (3%) Strand=Plus/Minus Query 75876 TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACCATATATGCTTTACAAGG 75935 ||||| | |||||| | | | || || |||||||| | || | |||||||| || | Sbjct 408630 TTTGGTATGCTATTTTGGAGGCTCAAACAGAGACTGGGAACCCCTTCATGCTTTATAAAG 408571 Query 75936 ATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAATCAAGAGCTCAAATCTTT 75995 |||| || ||| |||||||||||||| || | ||||| || |||||| || | | Sbjct 408570 ATGCGTGCAACCGCAAGAGTAACCAAAAAAACCTTGGAACTATTCGGAGCTCCAACTTGT 408511 Query 75996 GCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGTTTGCAATTTGGCATCAA 76055 |||||||||| | |||||||| | ||| || || |||||||||||||| || Sbjct 408510 GCACGGAAATCATCGAGTACACCGCGCCGGACGAAGTCGCAGTTTGCAATTTGGCGTCCC 408451 Query 76056 TCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTTGATTATGAAAAACTTCATG 76115 | || | || | |||||| || | || | ||| | || | | | |||| Sbjct 408450 TTGCTTTGCCCACATATGTCGATCCTGTCCGGGGCGAGTATGACTTTGGGAGATTGCATG 408391 Query 76116 AAATCACA-AAGA--TTGTTACCAAAAATCTAAACCGAG-TCATTGACAGAAATTTTTAT 76171 || ||||| ||| ||||| ||| || || | || ||||||||| ||| ||| Sbjct 408390 AAGTCACACAAGTCCTTGTTCTCAA----CTTAAACAAGATCATTGACAACAATCACTAT 408335 Query 76172 CCCGTTG-AGACTGCGCGAAAGTCTAATATGCGACACAGACCTATTGGTTTGGGTGTTCA 76230 ||||| ||| || | ||| ||| | || || | ||||||| ||||||| || Sbjct 408334 CCCGTCCCAGAA-GCCAGGAAGAGTAACTTCCGTCATCGTCCTATTGCGGTGGGTGTGCA 408276 Query 76231 AGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATTCAGATGAAGCCAAGGA 76290 || ||||| |||| || || | || | | ||||| || ||| || ||| | Sbjct 408275 GGGACTCGCTGATGCTTTCCTTGCGCTGCGATTGCCGTTTGACTCGCCTGAGGCAAAGCA 408216 Query 76291 GATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGGAGGCGAGTTGTGAATT 76350 | ||||| || ||||| ||||| || || || ||| | ||| ||| |||||| | Sbjct 408215 GTTGAATATTCAAATCTTCGAAACAATCTACCATGCAGCTCTGACCGCGTCTTGTGACAT 408156 Query 76351 GGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCGCGTCCCAAGGGGTGCT 76410 || | | | ||| | ||||| || | ||| |||||||||| || || |||| || Sbjct 408155 AGCCAAGGTTGATGGTCCTTATGAAACTTATGAAGGTTCTCCCGTTTC--AAAGGGTACT 408098 Query 76411 T--CAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--ACTGGGATGTTCTCA 76466 | |||| ||||||||| || |||| || | || | || | ||||||| |||| Sbjct 408097 TTGCAGTACGATATGTGG-AACGTGACTCCGA-CTGACCTTTGGGACTGGGACACCCTCA 408040 Query 76467 AGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACCAATGCCAACAG 76526 || | ||| | | ||| | || |||||| | | | || || ||||| || | Sbjct 408039 AGAAGGATATCGCAAAACACGGTGTACGCAACAGTTTACTTGTTGCTCCGATGCCTACTG 407980 Query 76527 CCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATACACAACAAACATCT 76586 || ||| || ||| | ||| || ||||| ||||| ||||||||| ||||||||| Sbjct 407979 CCAGCACGAGTCAGATCCTCGGTTTCAACGAATGTTTTGAGCCATACACATCAAACATCT 407920 Query 76587 ACCTGAGAAGAACCCTCGCAGGTGAGTTTGTCATTGTCAA-CAAGCACCTCGTCAATGAC 76645 || | | || ||||| || || | ||||| | | | || |||| || Sbjct 407919 ACTCTCGCCGGGTTCTTGCAGGCGAATTCCAAGTCGTCAATCCATGGCTTC-TCAAGGAT 407861 Query 76646 CTCAAGAAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAAAGCGGGTGGT 76705 || | | || |||||||| | | |||||| | | ||| | | || ||| Sbjct 407860 CTTGTTGATCTCGGCCTCTGGTCAGACAACATGAAGAACCGCATTATTGCTGACGGCGGT 407801 Query 76706 TCCATTCAAAATATCTCAGATATCCCAGATGATATCAAGAATCTCTACCGCACAGTGTGG 76765 || | || || ||| | ||||||| | || ||||| ||||||| ||||||||| Sbjct 407800 TCAGTCCAGAACATCCCCAATATCCCTGCAGACATCAAAGCTCTCTACAAGACAGTGTGG 407741 Query 76766 GAAATCAAGATGAAAGA-TGTCATTGACATGGCCGCAGATCGTGGTCGC-TTCATTGATC 76823 |||||| || || ||||| | ||||| || || || || ||| ||||| |||| Sbjct 407740 GAAATC-TCCCAAAGGACCATCATTCAGATGGCTGCTGACCG-GGGCGCATTCATCGATC 407683 Query 76824 AAAGTCAAAGTATGAATCTATTCAT-GGAAAG-TCCAACGATGTCCAAGCTCTCTTCTAT 76881 || |||| | | || || ||| |||| || || ||| ||| || | || Sbjct 407682 AATCTCAATCTCTCAA--CATCCATCTCAAAGAGCCTACAATGGGCAAAATCACCAGCAT 407625 Query 76882 GCATATGTACGCG-TGGAAACAGGGGCTCAAAACCGGAATGTACTATCTCCGATCAAAGG 76940 |||| | | || | ||||| ||| || || || || |||||||||||||| ||| || Sbjct 407624 GCAT-TTTGCGGGATGGAAGTTGGGCCTGAAGACTGGGATGTACTATCTCCGTACAATGG 407566 Query 76941 C 76941 | Sbjct 407565 C 407565 >seq2228 Length=283306 Score = 116 bits (128), Expect = 4e-21 Identities = 331/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Plus Query 65023 AAGAAGGCGAAATGGGCAATGAAATGGTTTGAC-ACAAAGTCTCGCTCCTTCGCCGAGCG 65081 |||||||| | ||||| || |||| | | |||| | || | |||||||| | || Sbjct 201401 AAGAAGGCTGATTGGGCCATTCGATGGATCCAAGACAAGGAATC-CACCTTCGCCCAACG 201459 Query 65082 CCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTA 65141 ||| |||| ||||| || || |||||||||||| || || ||| |||||| Sbjct 201460 CCTGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATTTT 201519 Query 65142 TTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCG 65201 ||||||||||| || || || ||||| || || || || |||||| | |||||||| Sbjct 201520 CTGGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCCCG 201579 Query 65202 AGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAGACTTTGCGTAATAGACC 65261 || |||||||||||| || |||||| |||||| | || || | || Sbjct 201580 TGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCCCACCTCCGCCATCGCCC 201639 Query 65262 ---CACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGAGATTGAGAAAGGGTT 65318 | || | | | | | |||||| | | |||||| |||||||||||||| | || Sbjct 201640 CGGCCCTTCGG---CCGTTGAGGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGAATT 201696 Query 65319 CATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGAGAAGATGTCCGAGTA 65378 | | || || || |||||| || | || |||||| | || |||| | | || Sbjct 201697 CTTAACTGATGCTCTTCCATGTGCCCTTCTTGGCATGAACGCCAAGCTCATGTGCCAATA 201756 Query 65379 CATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGT-GCCACCCA-----TTTG 65432 || |||| ||| | || | || || |||| | | || | | | | Sbjct 201757 TATCGAGTTTGTTGCCGACAGACTGCT------TGTTGCTTTGGGCAACAAAAAGTTCTA 201810 Query 65433 GAACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGGAAGACCAACTT 65492 || || | || ||||||||||||||||| ||||| | | || ||||||||||| Sbjct 201811 CAATGCCACCAACCCATTTGACTTTATGGATAACATCTCGTTGGCCGGCAAGACCAACTT 201870 Query 65493 CTTTGAGAAGCGAGTTGGGGACTA 65516 ||| |||||||| ||||| || || Sbjct 201871 CTTCGAGAAGCGGGTTGGTGATTA 201894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596533425510880