Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_021339.1 Length=51077 Score E Sequences producing significant alignments: (Bits) Value seq3761 136 1e-27 seq3296 114 4e-21 >seq3761 Length=1757 Score = 136 bits (150), Expect = 1e-27 Identities = 171/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 40167 CCGTACGTCGCGATCTGCGCGACCTTGTCGGCCCCGTACTTCCGGGTGACGTACTGGATG 40226 ||| | ||||||||||| ||| ||| |||||||| | ||||||| |||| Sbjct 697 CCGAAGGTCGCGATCTGGCTGACGGCCTCGCGGCCGTACTTGTCCTTCACGTACTCGATG 638 Query 40227 ACCTCGCCACGAC--GCCGGTCATCGAAGTCGATGTCGACATCGGGCATGGACACGCGCT 40284 ||| | | || ||| | || |||||||||||||| || ||||| |||||||||| Sbjct 637 ACCCGGTCCCGGTTGGCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACGCGCT 580 Query 40285 CGGGGTTCAGGAAGCGCTCGAAGATGAGCCCGTGCTCCAGCGGGTCGAGGTCGGTGATCC 40344 | |||||||||||||||||||| | || || || || || ||||||||||||||| Sbjct 579 CCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTGGAGGGGATCGAGGTCGGTGATCT 520 Query 40345 CGAGGACGTAGGCGACCAGCGAACCGGCCGCAGAGCCCCGCCCAGGGCCGACC 40397 ||| ||||| |||||||| ||||| | || || || || ||||||||| Sbjct 519 TGAGCGAATAGGCCACCAGCGATCCGGCGCCTGATCCACGGCCCGGGCCGACC 467 Score = 96.9 bits (106), Expect = 1e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 39287 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATCGCCCGGCGAAGCAGGTCGGCCTGACC 39346 || ||||| |||||| |||||||||||||||||||||||| |||||||| || || Sbjct 1622 CTGGGCCATCTCCTCGGCCTTCTTCTTGCCCATCGCCCGGCGCAGCAGGTCCGCGCCGCC 1563 Query 39347 CAGGGTGTACCCGGCCATGACCTGTGCAACCTTCTGCACCTGCTCCTGGTAGA 39399 ||| ||||| ||| ||| || ||| || || | |||||| |||||||||| Sbjct 1562 CAGCGTGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGTTCCTGGTAGA 1510 >seq3296 Length=739 Score = 114 bits (126), Expect = 4e-21 Identities = 350/535 (65%), Gaps = 17/535 (3%) Strand=Plus/Plus Query 3414 CTTCAGCCGGGTGACGAGATCGTCCTCGGCTTCGACGGTGGCAAGACCCACGACGCGACC 3473 |||||||| || ||| |||||| |||| |||||||| |||||||| |||||||||| Sbjct 157 CTTCAGCCCGGCGACACCATCGTCATCGGGTTCGACGGCGGCAAGACAGACGACGCGACA 216 Query 3474 GCCCTTGTGGCGATCCGCGTCCGGGACATGGCCGCCTTCTTGCTGGGTCTCTGGGAGAAG 3533 || | | || | |||||| ||| | ||| ||| || ||||||||||| Sbjct 217 GCGATCATCGCTCTTCGCGTCGCCGACCGGCTCGCGCAGCCGCTCGGGATCTGGGAGAAG 276 Query 3534 CCAGACGGACCCCAGGGCGAGAACTGGGAGGTCCCTCGCTGGGAGGTCGACTCCGAG--- 3590 || || || || | ||| |||||||||||||| | || | || | |||| Sbjct 277 CCCGAGGGCCCTCTCGGCAAGAACTGGGAGGTC---GACAGGATCGCCGTCGGCGAGCTC 333 Query 3591 GTGCACAGCGCCTTCAAGCAGTTCAAGGTCCAGGCGTTCTACGCCGACGTTGCGCTGTGG 3650 || | ||||||| | || | | ||| | |||| ||||||||| ||| ||| Sbjct 334 GTCGAGCACGCCTTCGGGACGTACGACGTCGTCGGCTTCTTCGCCGACGTCAAGCTCTGG 393 Query 3651 GAGTCGTACATCTCCGAGTGGTCGGAGACCTACGGTGACGGCCTGGCGGTGAAGTCG-CC 3709 ||||| |||||| | |||||||||| |||| ||| | || ||||||| || || Sbjct 394 GAGTCCTACATCGACACCTGGTCGGAGAAGTACGCCGACCGGCTCCTGGTGAAGGCGACC 453 Query 3710 GGTCGGTCGCGATGCGATCGGCTTCGACATGCGC-TCCTC--GCTGAAGCTCGTGACCAT 3766 ||||| || |||||| |||||||||| || | || | ||||| |||| Sbjct 454 CCGAAGTCGC----CGGTCGGCTACGACATGCGCGGCCACCAGCAGGAGCTC---ACCAA 506 Query 3767 GGCGCATGAGCGCCTGATGCGTTCCATCTTCGACAAGAAGCTCGCCCACGATGGCGACCG 3826 ||| || ||| | | | ||| ||| || || || ||| | | | Sbjct 507 GGCCACCGAAGCCCTCGTCCAGGCGATCGAGGACCAGCAGATCCGGCACACCGACCATGC 566 Query 3827 CTCCCTGCGTCGCCACGCGCTCAACGCGCGTCGGCGGACGAACAACTACGGCGTCTCCTT 3886 | | ||| || |||| ||| || ||||| | ||| | |||||| ||| Sbjct 567 CGCGCTGAACCGGCACGTCGGGAACTGCCGCCGGCGCCCCAACCGGTGGGGCGTCAGCTT 626 Query 3887 CGGCAAGGAGTCCAGAGAGTCGCCTCGCAAGGTCGACGCCTACGCGGCGCTGATG 3941 ||||||||| ||||| |||||||| |||||||||| || ||||||| || || Sbjct 627 CGGCAAGGAATCCAGGGAGTCGCCGAAGAAGGTCGACGGCTTCGCGGCGTTGCTG 681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 163315391572818