Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq3934 116 5e-20 seq1079 113 6e-19 seq2228 102 1e-15 >seq3934 Length=413549 Score = 116 bits (128), Expect = 5e-20 Identities = 180/257 (70%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || || || || | ||||||||| ||||||||||| |||| ||||| || Sbjct 408985 TGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTAGAG 409044 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 |||||| || || || | ||||| ||| | ||||| | || || ||| Sbjct 409045 GAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATACGATGGATATTAAGACCG 409104 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 || ||||| || | |||||| || || ||||| || || || |||||||| || ||| Sbjct 409105 ATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGATACCATCG 409164 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 || || ||||||| || | |||||| || || | | || || |||| || || Sbjct 409165 ATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGTTGCGGTGTTCCC 409224 Query 1630306 GCGTTGAAGAGCGTGGG 1630322 |||||||| || ||||| Sbjct 409225 GCGTTGAAAAGAGTGGG 409241 Score = 89.7 bits (98), Expect = 6e-12 Identities = 118/160 (74%), Gaps = 3/160 (2%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTC-GCAACGTGCCGGCAGGCCTCGGC 19103 |||||||||| || || || ||||| || || |||| | || || || | || || ||| Sbjct 247874 AGGACAGCATTGGAGGAACAGTGACTTGTGT-TGTCCGTAATGTTCCTGTCGGTCTTGGC 247932 Query 19104 GAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCC 19163 ||||| || || ||||| |||| ||| || ||||| || ||||| ||||| || Sbjct 247933 GAGCCTTGTTTCGACAAACTCGAAGCCAAACTGGCCCATGCTATGCTTAGTATCCCCGCG 247992 Query 19164 ACCAAGGGATTCGAGATTGGCAGCGGGTTTG-CGGGTGCG 19202 || ||||||||||||||||| || |||| ||| |||| Sbjct 247993 ACTAAGGGATTCGAGATTGGGTCAGGCTTTGCCGGCTGCG 248032 >seq1079 Length=322727 Score = 113 bits (124), Expect = 6e-19 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || ||||| ||||| |||||| || |||||||| | ||||||||| |||| |||||| Sbjct 155692 GCAGCGAACTATCTCGATATCAAGGCTTTGCTCGATGTCGGGTGCAAGACTGTCGCCAAC 155751 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAGTACG 1592300 |||||||| || || || || |||||||| | |||||||| |||||| || ||| Sbjct 155752 ATGATCAAAGGAAAATCTCCTGAGGAGATTAGAAAGACCTTCAACATCCAGAACG 155806 >seq2228 Length=283306 Score = 102 bits (112), Expect = 1e-15 Identities = 221/324 (68%), Gaps = 9/324 (3%) Strand=Plus/Minus Query 868690 CGCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGAT 868749 |||||| ||| || || || ||| |||||| |||||||||||||| | | |||||| Sbjct 201904 CGCCTTCTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGAT 201845 Query 868750 CAACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGC 868809 ||||| | || ||||||| | |||||| ||||| | || | | | Sbjct 201844 GTTATCCATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTTGCCCAAAGCAAC 201785 Query 868810 GAGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGAT 868869 ||||| | |||||| ||||||||||| || ||||||||||| |||||||||||| | Sbjct 201784 AAGCAGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGCGTTCATGCCAAG 201725 Query 868870 GAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || || || || | || | | || || ||||| ||||| || ||||| ||| Sbjct 201724 AAGGGCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCTGTGAT 201665 Query 868930 GATCTGCCT---GGGCACGTCGGCCGAGGGCTTGTTGAC-GAGCATCGTGTAGAGCAGGC 868985 ||| |||| ||| || || | |||| | || | ||| | | |||| |||| Sbjct 201664 GAT-GGCCTCAACGGC-CGAAGGGCCGGGGC--GATGGCGGAGGTGGGAGAAGAGGAGGC 201609 Query 868986 AGGCAAAGTCGCAGTGCA-ACCCT 869008 ||||||||||| ||| | ||||| Sbjct 201608 AGGCAAAGTCGGTGTGGAGACCCT 201585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106741104222767