Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3060 136 3e-27 >seq3060 Length=205498 Score = 136 bits (150), Expect = 3e-27 Identities = 163/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29569 AAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGA 29628 || || || || | ||| || || || ||||| |||||||| || || | | |||||| Sbjct 122871 AAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGA 122812 Query 29629 GAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCT 29688 || ||||| |||||||| ||| | ||||| | ||||| || || ||||| ||||| Sbjct 122811 CCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCC 122752 Query 29689 TTGTCTTGTAATTTTTGTTT-GACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGT 29747 |||||||| ||| || |||| ||| | || | ||||| ||| ||||||||||| || Sbjct 122751 TTGTCTTG-AATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGT 122693 Query 29748 TATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || ||||| || || ||||| || ||||| |||||||| Sbjct 122692 GATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 104 bits (114), Expect = 2e-17 Identities = 165/233 (71%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 29555 GTTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAAT 29614 |||| || || | ||| | || |||||||| || ||| ||| || || |||||||||| Sbjct 123112 GTTG-CCGCCGCGCAATCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAAT 123054 Query 29615 CCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCG 29674 | | | || ||| ||| || || || || |||||| | || | || || || || | Sbjct 123053 CGGAGAGTGTCCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGG 122994 Query 29675 GCGGAATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGT 29733 | || ||||| ||||| ||||| |||||| || || || | || | ||||| || Sbjct 122993 GTGGGATACCTTCTTTATCTTG-AATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGAC 122935 Query 29734 TCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || | || ||||| ||||| ||||| || |||||||| || ||||| Sbjct 122934 TCGACCTCCAATGTAATAGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Score = 102 bits (112), Expect = 6e-17 Identities = 140/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||| || || ||||| ||||| ||||||||||| | | |||||| Sbjct 122641 ACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTGCGACC 122582 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || |||||||||||||| | ||||| | ||||||||| || || || ||||| || Sbjct 122581 ATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCCTCCTT 122522 Query 29691 GTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTA 29749 || || ||| || | ||| || | || | || || || ||| || || ||||| | Sbjct 122521 ATCCTG-AATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGAGTGA 122463 Query 29750 TAGTTTTGCCAGT 29762 |||| || || || Sbjct 122462 TAGTCTTTCCCGT 122450 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385196425238991