Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2228 132 5e-26 seq4836 123 2e-23 seq3060 98.7 1e-15 seq2521 93.3 4e-14 seq3934 84.2 2e-11 >seq2228 Length=283306 Score = 132 bits (146), Expect = 5e-26 Identities = 344/520 (66%), Gaps = 17/520 (3%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || ||| || || || || ||||| || ||||| || ||||| ||| ||| ||||| | Sbjct 201898 CTGGTAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGATGTTATC 201839 Query 120411 CATAAACTCGAACGGGTTGCTCGCGTTAAAGTATTTCGGCTGGCCCAACTGTACGAGCAG 120470 |||||| || || |||||| | || || || | || | |||||| || ||||| Sbjct 201838 CATAAAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTTGCCCAAAGCAACAAGCAG 201779 Query 120471 TCGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCAGCAACGC 120530 || ||| || |||||||| || || | ||||||| || ||||||||||| || || | Sbjct 201778 TCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGCGTTCATGCCAAG-AAGGG 201720 Query 120531 CAC-CGGCAACGCCGACGTGAAAAACTCCTTCTCAATGTCCACCGCCTCCTTGAACATGG 120589 ||| || | || || || || ||||||||||| || || ||||| ||| |||| Sbjct 201719 CACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCTGTGATGATGG 201660 Query 120590 ------CGAGCATAGTGTGGCCGGGCATCTTGTGTTCGATGCGCGTTCGGTAGTACAGGC 120643 || | || ||||||| | | | || | | | | || |||| Sbjct 201659 CCTCAACGGCCGAAG---GGCCGGGGCGATGGCG---GAGGTGGG---AGAAGAGGAGGC 201609 Query 120644 ACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGC 120703 | |||||||| ||||| || |||||||| || || |||| || || ||| || || | Sbjct 201608 AGGCAAAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAAAGTGAGAC 201549 Query 120704 CGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACA 120763 ||||||| | ||| |||| | |||| || | || || ||| ||||| | Sbjct 201548 CGGGCATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACTGAAGAAGA 201489 Query 120764 CGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGA 120823 || || ||| |||||||| |||| ||| | ||| || || | |||| | || Sbjct 201488 TACCTTCAACGGCTGCAAAGGCAACCAGGCGTTGGGCGAAGGTGGATTCCTTGTCTTGGA 201429 Query 120824 TCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGG 120863 |||| |||||||| || ||||| || || | ||| || Sbjct 201428 TCCATCGAATGGCCCAATCAGCCTTCTTACGAATGCAAGG 201389 >seq4836 Length=199183 Score = 123 bits (136), Expect = 2e-23 Identities = 137/181 (76%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 133473 TTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGCCCGCGTAAA 133530 || || ||||||||||||| || || ||| ||||||||||||||| || ||| ||| Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAGT--ACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAA 162890 Query 133531 TGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGCT 133590 | | ||||||||||| ||||| |||||||||||||| ||| || ||| | | | Sbjct 162889 TCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGT 162830 Query 133591 CAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGA 133650 | | ||||||| ||| |||||| || | ||||| || |||||||| || || || |||| Sbjct 162829 CGATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 162770 Query 133651 A 133651 | Sbjct 162769 A 162769 >seq3060 Length=205498 Score = 98.7 bits (108), Expect = 1e-15 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| || ||||| || | |||| ||| |||||||||||| ||||| Sbjct 122850 GTAGACTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGACC-GTCCTCGAGCTGTTTGCC 122792 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || |||| | ||||||||||| || || || || |||||||| ||||| || Sbjct 122791 GGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGAATCTTAGTTTT 122732 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | ||||| | | ||| || || | |||| ||||| ||||||| || Sbjct 122731 GACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTTTTTCCGGTCAAGGT 122672 Query 133643 TTTTACGAAAATCTGCAT 133660 || || ||||||||||| Sbjct 122671 CTTCACAAAAATCTGCAT 122654 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 || || | ||| || || ||||| || |||||||| | | | | ||| || || | Sbjct 122339 AAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATC--CGAAAGAGTACGGCCATCTTCAA 122282 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 |||| || || ||| | || | || |||||||| |||||||| || |||||||| || Sbjct 122281 GCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATTCCCTCCTTGTCTTGGA 122222 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 ||||| ||| | | || | || || || ||| || || | ||||| ||| |||| Sbjct 122221 TCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACCTCAAGGGTGATGGTCTTGC 122162 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||| ||| || || ||||||||||| Sbjct 122161 CAGTCAAAGTCTTGACAAAAATCTGCAT 122134 >seq2521 Length=135005 Score = 93.3 bits (102), Expect = 4e-14 Identities = 86/107 (80%), Gaps = 4/107 (4%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGAGCTGCTTG 133520 ||||||||||||||| || ||||| || | | | | ||| ||||||||||||||| Sbjct 57601 GGTGGACTCTTTCTGGATGTTGTAGTC--CGAGAGGGTACGGCCATCCTCGAGCTGCTTG 57658 Query 133521 CCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTC 133567 || ||| | ||||| || |||||||| ||||| |||||||||||||| Sbjct 57659 CCGGCGAAGATGAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTC 57705 >seq3934 Length=413549 Score = 84.2 bits (92), Expect = 2e-11 Identities = 147/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 149471 GTAGATGCCCTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGG 149530 |||||| || |||||||| || |||||| | ||||| || ||| ||| || || Sbjct 409152 GTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGG 409211 Query 149531 AAAACGCGTGCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCAT 149590 | || || || ||| | |||||| || ||||||||||||||||| ||| Sbjct 409212 TTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGAGACAT 409271 Query 149591 CATCTCGTACGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCG 149650 || | |||| |||| | | || ||||| |||||||| ||||| | || || || Sbjct 409272 CAGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACG 409331 Query 149651 CATCAGCATATGCTGCGGTCGCTCCGCCACTTTG 149684 ||| | ||| || ||||| ||||| || || ||| Sbjct 409332 CATAATCATGTGTTGCGGACGCTCAGCGACCTTG 409365 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483391486571240