Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq4836 111 1e-19 seq3060 107 2e-18 >seq4836 Length=199183 Score = 111 bits (122), Expect = 1e-19 Identities = 124/166 (75%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 35547 CCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||||||| || ||||||||| ||| || || |||| || |||||||| || || || | Sbjct 162949 CCTTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAA 162890 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 |||| ||||||||||| | ||||| || ||||||||| ||| || ||||| | | Sbjct 162889 TCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGT 162830 Query 35667 CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 | | ||||||||| || ||||| || | ||||| || || || || Sbjct 162829 CGATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGT 162784 >seq3060 Length=205498 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 |||||||| | | | ||||| || | ||| ||||| || ||||||||||| | Sbjct 122360 CCACCACGAAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAA 122301 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| ||||| || || ||||| || |||||||| | ||| Sbjct 122300 AGAGTACGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGG 122241 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | ||||||||| ||||||| ||||| | | | | || || | || || ||| Sbjct 122240 ATTCCCTCCTTGTCTTGGATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACC 122181 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | ||||| || || || |||||||| || ||||| |||||||| Sbjct 122180 TCAAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| ||||| | | || | ||| | ||| ||| || ||||||||||| || | Sbjct 122880 CCACCGCGTAAGCGAAGGACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGAT 122821 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || |||| || ||||| || || ||||| ||||| ||||||||||| | ||| Sbjct 122820 AGCGTGCGACCGTCCTCGAGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGA 122761 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCCAC 35688 | | |||||||| | ||| || | || |||| | | ||||| || || || Sbjct 122760 ATTCCCTCCTTGT-CTTGAATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTAC 122702 Query 35689 CTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | |||||| ||||| || ||||| || |||||||| |||||||| Sbjct 122701 TTCAAGCGTGATTGTTTTTCCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450766265003080