Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3060 147 2e-30 seq3934 104 2e-17 seq4836 93.3 4e-14 >seq3060 Length=205498 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 ||||| || || || || || || |||||||||||||| | ||| || ||| ||| Sbjct 122862 ACGAGATGCAGTGTAGACTCTTTCTGAATGTTGTAGTCTGATAGCGTGCGACCGTCCTCG 122803 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||||||||| |||||||||||||||||||| || || || || || || || |||||| Sbjct 122802 AGCTGTTTGCCGGCAAAAATCAAACGCTGCTGGTCTGGTGGAATTCCCTCCTTGTCTTGA 122743 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| ||| | |||||| || || || || || || || || ||||| Sbjct 122742 ATCTTAGTTTTGACGTTGTCGATTGTGTCTGAAGACTCTACTTCAAGCGTGATTGTTTTT 122683 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || || ||||| ||||| Sbjct 122682 CCGGTCAAGGTCTTCACAAAAATCTGCAT 122654 Score = 111 bits (122), Expect = 2e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 134498 TCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGA 134557 || ||| || | || || ||| |||||| || ||||| || ||| | || || Sbjct 123097 TCTCAATACCAAATGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGAGAGTGTCCGACC 123038 Query 134558 GTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTT 134617 || || ||||| || || ||||| || | ||||| || ||||| || || |||||||| Sbjct 123037 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGGGATACCTTCTTT 122978 Query 134618 TTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAAT 134677 ||||||||||| || || ||| | ||||| ||||| || || || | ||||| Sbjct 122977 ATCTTGAATTTTCGTCTTAACGTTGTCGATCGTGTCTGACGACTCGACCTCCAATGTAAT 122918 Query 134678 GGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || |||||||| || ||||| ||||||||||| Sbjct 122917 AGTCTTGCCGGTTAATGTCTTAACAAAAATTTGCAT 122882 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||| || | || || || || || ||||||||||| ||||| || || Sbjct 122652 CCACCTCGGAGACGGAGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAG 122593 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| || || || || |||||||| || |||||||| || |||||||| || || Sbjct 122592 AGAGTGCGACCATCCTCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGG 122533 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || ||| || || | || ||||| ||||| || Sbjct 122532 ATGCCCTCCTTATCCTGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACC 122473 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 |||||||| || || || || || | ||| || |||| Sbjct 122472 TCGAGAGTGATAGTCTTTCCCGTGAGAGTCTTGACGA 122436 >seq3934 Length=413549 Score = 104 bits (114), Expect = 2e-17 Identities = 168/239 (70%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 7529 TGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGTGGCGG 7588 ||||| |||||| ||| | ||| || || ||||||||| | |||| || |||| Sbjct 409381 TGTTGCGAATCAATGGCAAGGTCGCTGAGCGTCCGCAACACATGATTATGCGTGTTGCGG 409322 Query 7589 TGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTCTTTGA 7648 | |||||||| |||||||||||||| || | |||||||| | |||||||| || Sbjct 409321 TTGGCATTCATGGCGAAGACATTGAGAAGGCGATCGAAACGTATAATCTGATGTCTCAGA 409262 Query 7649 AACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGC-GCCTCAATTG 7707 || | ||||| || ||||| ||||| | || |||||| || | ||| || || || Sbjct 409261 AATATTTTACACATGCTTCCCCCACTCTTTTCAACGCGGGAAC-ACCGCAACCACAGATG 409203 Query 7708 TCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACACGCT 7766 |||| |||||| | | ||| ||||| |||||||| || || ||| | || || Sbjct 409202 GCCTCCTGTTTTCTCATTGATATGAAGGAAGATAGCATCGATGGTATCTACGATACTCT 409144 >seq4836 Length=199183 Score = 93.3 bits (102), Expect = 4e-14 Identities = 129/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 ||||||| || ||||| |||| | || | ||| |||||||| || || || |||| Sbjct 162949 CCTTTTGGATATTGTAATCGCTCAAAGTACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAA 162890 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||||||||||||| || || || |||||||| || || || ||||| || || || Sbjct 162889 TCAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGT 162830 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||| || ||||| || || || || || || ||||| | || || |||| Sbjct 162829 CGATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGA 162770 Query 134704 A 134704 | Sbjct 162769 A 162769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505367753904520