Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq3934 192 7e-44 seq2228 129 7e-25 >seq3934 Length=413549 Score = 192 bits (212), Expect = 7e-44 Identities = 709/1085 (65%), Gaps = 38/1085 (4%) Strand=Plus/Plus Query 110354 GCCTTTGATCGGAGATAGTACATCCCGGTCTTGAGTCCTTGTTTCCATGCGTACATATGC 110413 ||| ||| ||||||||||||||||| ||||| || || |||||| | | |||| Sbjct 407565 GCCATTGTACGGAGATAGTACATCCCAGTCTTCAGGCCCAACTTCCATCCCGCAAAATGC 407624 Query 110414 ATAGAAGAGAGCTTGGACATCGTTGGA-CTTTCC-ATGAAGAGGTTCATACTTTGACTTT 110471 || | || ||| ||| || || |||| ||| || ||| | | |||| || Sbjct 407625 ATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGATG--GATGTTGAGAGATTGAGATT 407682 Query 110472 GGTCAATGAA-GCGCCCCCGTTGTGCCGCCATATCAATGACA-TCCTTCATCTTA-ATTT 110528 | || ||||| ||||||| || || ||||| | ||||| ||||| | | |||| Sbjct 407683 GATCGATGAATGCGCCCCGGTCA-GCAGCCATCTGAATGATGGTCCTT--TGGGAGATTT 407739 Query 110529 CCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGGATGG 110588 |||| ||||| |||||| ||||| || | ||||||| | ||| ||||||| | Sbjct 407740 CCCACACTGTCTTGTAGAGAGCTTTGATGTCTGCAGGGATATTGGGGATGTTCTGGACTG 407799 Query 110589 AACCCCCCGCCTTCACCA----TGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 |||| ||| ||| || || | | |||||| | | |||||||| || | | Sbjct 407800 AACC----GCCGTCAGCAATAATGCGGTTCTTCATGTTGTCTGACCAGAGGCCGAGATCA 407855 Query 110645 TTGAGGTCATTGACGAGGTGCTTG-TTGACAATGACAAACTCACCTGCGAGGGTTCTTCT 110703 || || |||| || | | | ||||| | || || ||||| || | | Sbjct 407856 ACAAGATCCTTGA-GAAGCCATGGATTGACGACTTGGAATTCGCCTGCAAGAACCCGGCG 407914 Query 110704 CAGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGT 110763 ||||||||||| ||||||||| ||||| ||||| || ||| | ||| || || Sbjct 407915 AGAGTAGATGTTTGATGTGTATGGCTCAAAACATTCGTTGAAACCGAGGATCTGACTCGT 407974 Query 110764 GGAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCG 110823 | ||| || ||||| || || | | | |||||| || | ||| | | ||| Sbjct 407975 GCTGGCAGTAGGCATCGGAGCAACAAGTAAACTGTTGCGTACACCGTGTTTTGCGATATC 408034 Query 110824 TTCCTTGAGAACATCCCAGTCGTA--GTTGAGCTTGGTTTCACCTTCCCACATGTCAAAC 110881 | |||||| |||||||| | | | || | || |||| |||| |||| || || Sbjct 408035 CTTCTTGAGGGTGTCCCAGTCCCAAAGGTCAG-TCGGAGTCACGTTCC-ACATATCGTAC 408092 Query 110882 TG--AAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 || ||| |||| ||| ||| |||||||| ||| | |||||||| | ||| | | | Sbjct 408093 TGCAAAGTACCCTTTGAAACG--GGAGAACCTTCATAAGTTTCATAAGGACCATCAACCT 408150 Query 110940 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 || | ||||| ||| ||| | ||| || || || ||||| ||||| || || Sbjct 408151 TGGCTATGTCACAAGACGCGGTCAGAGCTGCATGGTAGATTGTTTCGAAGATTTGAATAT 408210 Query 111000 TCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGA 111059 ||| || ||| || ||| || ||||| | | || | || || |||| |||| Sbjct 408211 TCAACTGCTTTGCCTCAGGCGAGTCAAACGGCAATCGCAGCGCAAGGAAAGCATCAGCGA 408270 Query 111060 GACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA- 111118 | || || ||||||| ||||||| | || || | ||| ||| | || ||| Sbjct 408271 GTCCCTGCACACCCACCGCAATAGGACGATGACGGAAGTTACTCTTCCTGGCT-TCTGGG 408329 Query 111119 ACGGGATAAAAATTTCTGTCAATGA-CTCGGTTTAGATTTTTGGTAACAAT--CTT-TGT 111174 |||||||| ||| ||||||||| || | || || ||| ||||| ||| ||| Sbjct 408330 ACGGGATAGTGATTGTTGTCAATGATCTTGTTTAAG----TTGAGAACAAGGACTTGTGT 408385 Query 111175 GATTTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAG 111234 || |||||| | | | || | ||| | || | || |||||| | || | Sbjct 408386 GACTTCATGCAATCTCCCAAAGTCATACTCGCCCCGGACAGGATCGACATATGTGGGCAA 408445 Query 111235 GGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTC 111294 || | || |||||||||||||| || || ||| | |||||||| | ||||| Sbjct 408446 AGCAAGGGACGCCAAATTGCAAACTGCGACTTCGTCCGGCGCGGTGTACTCGATGATTTC 408505 Query 111295 TGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCA 111354 || || |||||||| ||| ||| || || | || |||||||||||||| |||||| Sbjct 408506 CGTGCACAAGTTGGAGCTCCGAATAGTTCCAAGGTTTTTTTGGTTACTCTTGCGGTTGCA 408565 Query 111355 CGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTT 111414 |||||| || || |||||| |||| |||| ||||| || || | | | |||||| | Sbjct 408566 CGCATCTTTATAAAGCATGAAGGGGTTCCCAGTCTCTGTTTGAGCCTCCAAAATAGCATA 408625 Query 111415 CCAAA 111419 ||||| Sbjct 408626 CCAAA 408630 >seq2228 Length=283306 Score = 129 bits (142), Expect = 7e-25 Identities = 334/504 (66%), Gaps = 20/504 (4%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 || || || ||||||||||| |||||||||||||| || | | ||||| |||||| Sbjct 201894 TAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGATGTTATCCATA 201835 Query 122431 AAGTCAAATGGATTCTTCGCGTTCCAAA-----TGGGTGGC-ACCCCAACTTGTTTGAGG 122484 ||||||||||| || | || || | | | | || | | |||| || Sbjct 201834 AAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTTGCCCAAAGCAACA------AGC 201781 Query 122485 AGACGATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGG 122544 || | || | ||| |||| || || | | |||| || | |||||| || | ||| Sbjct 201780 AGTCTGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGCGTTCATGCCAAGAAGG 201721 Query 122545 TTACATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATG 122604 |||||| || || || | ||| | |||||||||||||| |||||| | | |||| Sbjct 201720 GCACATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCTGTGATGATG 201661 Query 122605 GCGTGGATAGTTTCGGTAGTG---GGTCTATTACGCAAAGTCTTGAAGAGCTCCACGGCA 122661 || | | | | | || | || | || || | |||||| |||| Sbjct 201660 GCCTCAACGG---CCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAAGAGGAGGCAGGCA 201604 Query 122662 AACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGC 122721 || || |||||||||||| || |||||||| | |||||| || || ||||| ||| Sbjct 201603 AAGTCGGTGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAAAGTGAGACCGGGC 201544 Query 122722 ATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCC 122781 || || || || ||||||||||| |||||| ||| || || |||||||||||| Sbjct 201543 ATAAGGCCACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACTGAAGAAGATACCT 201484 Query 122782 TCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACTTTG-CATCAAACCA 122840 || || ||||| |||| ||||||| |||||||| | || | ||| | | | ||| Sbjct 201483 TCAACGGCTGCAAAGGCAACCAGGCGTTGGGCGAAGGTG-GATTCCTTGTCTTGGATCCA 201425 Query 122841 TTTCATTGCCCATTTCGCCTTCTT 122864 | || ||||| | |||||||| Sbjct 201424 TCGAATGGCCCAATCAGCCTTCTT 201401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627993917709600