Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3934 149 8e-31 seq2228 145 9e-30 seq4759 96.9 4e-15 >seq3934 Length=413549 Score = 149 bits (164), Expect = 8e-31 Identities = 694/1078 (64%), Gaps = 28/1078 (3%) Strand=Plus/Plus Query 117828 GCCTTTGATCGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGC 117887 ||| ||| ||||| ||||||||||| ||||| || ||| |||||| | | |||| Sbjct 407565 GCCATTGTACGGAGATAGTACATCCCAGTCTTCAGGCCCAACTTCCATCCCGCAAAATGC 407624 Query 117888 ATTGAGGACAACTTGGAGAGGGTTGGA-CTTTCC-ATGAAGAGGTTCATACTTTGGGATT 117945 || || | ||| | || || |||| ||| || ||| | | ||| |||| Sbjct 407625 ATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGATG--GATGTTGAGAGATTGAGATT 407682 Query 117946 GATCGATGAA-GCGTCCCCGATCCGCCGCCATATCAATCACA-TCCTTCATCTTGATTTC 118003 |||||||||| ||| ||||| || || ||||| | ||| | ||||| |||||| Sbjct 407683 GATCGATGAATGCG-CCCCGGTCAGCAGCCATCTGAATGATGGTCCTTTGGGA-GATTTC 407740 Query 118004 CCACACAGTCCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGA 118063 |||||| ||| ||||||| || || || | ||||||| ||| || |||| || Sbjct 407741 CCACACTGTCTTGTAGAGAGCTTTGATGTCTGCAGGGATATTGGGGATGTTCTGGACTGA 407800 Query 118064 TCCACCCGCCTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAG 118123 || || | | ||| | | |||||| | | ||||||||| || | | || Sbjct 407801 ACCGCCGTCAGCAATAATGCGGTTCTTCATGTTGTCTGACCAGAGGCCGAGATCAACAAG 407860 Query 118124 ATCCTCCACGAG--ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA 118181 ||||| | || ||| |||||| || || || || || || || | ||| Sbjct 407861 ATCCTTGAGAAGCCATGG--ATTGACGACTTGGAATTCGCCTGCAAGAACCCGGCG-AGA 407917 Query 118182 -TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||||| || | |||||||||||||| || || ||| ||| | ||| || ||| Sbjct 407918 GTAGATGTTTGATGTGTATGGCTCAAAACATTCGTTGAAACCGAGGATCTGACTCGTGCT 407977 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCT-TTTCCCTAATGCGTT 118299 ||| || ||||| || || | || | ||||| || | ||| | ||| | | | || Sbjct 407978 GGCAGTAGGCATCGGAGCAACAAGTAAACTGTTGCGTACACCGTGTTTTGCGATATCCTT 408037 Query 118300 CCTTGAGAGCGTCCCAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTG 118357 | ||||| | ||||||||| | | | || | | | | | ||||||||| |||| Sbjct 408038 C-TTGAGGGTGTCCCAGTCCCAAAGGTCAG--TCGGAGTCACGTTCCACATATCGTACTG 408094 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 | |||| | || | || || || ||| | || ||||| || || ||||||| || Sbjct 408095 CAAAGTACCCTTTGAAACGGGAGAACCTTCATAAGTTTCATAAGGACCATCAACCTTGGC 408154 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 | || | ||| || ||||| || || |||||||| || || || ||||| Sbjct 408155 TATGTCACAAGACGCGGTCAGAGCTGCATGGTAGATTGTTTCGAAGATTTGAATATTCAA 408214 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACC 118537 ||| ||||| || ||||||| | ||| | || || |||| ||||| || Sbjct 408215 CTGCTTTGCCTCAGGCGAGTCAAACGGCAATCGCAGCGCAAGGAAAGCATCAGCGAGTCC 408274 Query 118538 TTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCC-ACGG 118596 || ||||| | |||| || ||||| | | ||| ||||| || ||| |||| Sbjct 408275 CTGCACACCCACCGCAATAGGACGATGACGGAAGTTACTCTTCCTGGCT-TCTGGGACGG 408333 Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC--CTT-TGTGATTT 118653 |||| ||| | || || | | | |||| || | |||| ||| ||||| || Sbjct 408334 GATAGTGATTGTTGTCAATGATCTTGTTTAAGTT---GAGAACAAGGACTTGTGTGACTT 408390 Query 118654 CATGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGA 118713 |||| | | | | ||| | || | || |||||| | || | || | Sbjct 408391 CATGCAATCTCCCAAAGTCATACTCGCCCCGGACAGGATCGACATATGTGGGCAAAGCAA 408450 Query 118714 TTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGC 118773 ||||||| ||| || || | | || ||| | |||||||| || |||||||||| Sbjct 408451 GGGACGCCAAATTGCAAACTGCGACTTCGTCCGGCGCGGTGTACTCGATGATTTCCGTGC 408510 Query 118774 ACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCAT 118833 ||||||| || ||| ||| || || | ||| ||||| || ||| ||| ||||||| Sbjct 408511 ACAAGTTGGAGCTCCGAATAGTTCCAAGGTTTTTTTGGTTACTCTTGCGGTTGCACGCAT 408570 Query 118834 CCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCA 118891 | || ||||||||| | || |||| ||||| ||||| | || | |||||| | ||| Sbjct 408571 CTTTATAAAGCATGAAGGGGTTCCCAGTCTCTGTTTGAGCCTCCAAAATAGCATACCA 408628 >seq2228 Length=283306 Score = 145 bits (160), Expect = 9e-30 Identities = 284/418 (68%), Gaps = 4/418 (1%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || ||||||||||||||||||||||| ||||| ||| |||| ||| || |||||| Sbjct 201894 TAATCACCAACCCGCTTCTCGAAGAAGTTGGTCTTGCCGGCCAACGAGATGTTATCCATA 201835 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAA--TTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || ||||||||||| | | || | | || || | | || | || || | Sbjct 201834 AAGTCAAATGGGTTGGTGGCATTGTAGAACTTTTTGTTGCCCAAAGCAACA--AGCAGTC 201777 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 || | || |||| || || | |||| || || |||||| || | ||| || Sbjct 201776 TGTCGGCAACAAACTCGATATATTGGCACATGAGCTTGGCGTTCATGCCAAGAAGGGCAC 201717 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 |||| || || || | ||| |||||||||| || || || || | |||||| | Sbjct 201716 ATGGAAGAGCATCAGTTAAGAATTCCTTCTCAATCTCAACTGCCTCTGTGATGATGGCCT 201657 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCT 130025 || || | | ||| || | || ||| | |||||| |||||| || Sbjct 201656 CAACGGCCGAAGGGCCGGGGCGATGGCGGAGGTGGGAGAAGAGGAGGCAGGCAAAGTCGG 201597 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||||||||||||||||||||| || | ||||||||| || ||||| ||||| || | Sbjct 201596 TGTGGAGACCCTCGTCACGGGAAATCAATTCATTCGAAAAAGTGAGACCGGGCATAAGGC 201537 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 130143 | || ||||||||||||||||| | | || |||||| ||||||||| || || || Sbjct 201536 CACGTTTCTTCAACCAGAAAATAGAAGCGAAAGAGCCACTGAAGAAGATACCTTCAAC 201479 >seq4759 Length=494668 Score = 96.9 bits (106), Expect = 4e-15 Identities = 327/501 (65%), Gaps = 25/501 (5%) Strand=Plus/Minus Query 14065 ATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGC 14124 |||||| || || || || | | ||| | |||||| | ||| | ||| || | || Sbjct 212480 ATCAAATCGTCCAGGACGCATCAAGGCCTTGTCAAGCACATCCGGTCTGTTAGTACCGGC 212421 Query 14125 GATGACAACGA--TGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTG 14182 || ||| || | ||| || | ||| || || |||||||| ||||| | |||||| Sbjct 212420 GAGGACGACCACCTGCTCGGATG--TATTGAATCCGTCCATCTCGGTCAAAATCTGATTG 212363 Query 14183 ATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCA--CTGCGTTGCT------ 14234 | || ||| ||||| || || | ||||| | |||| ||||| Sbjct 212362 AGTGTGCTTTCTCGTTCGTCGTTACCG------CCACCGAAATTCTGCTTTGCTCTTGAT 212309 Query 14235 -TACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACT 14293 |||| | |||||||| || |||||||||| ||| || || ||| | || ||| | Sbjct 212308 TTACCAATAGCGTCAATCTCGTCGATGAAAATGATGCACGGGGTATTCTTTCGCGCAGTT 212249 Query 14294 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGG-- 14351 |||| | ||| ||||| | | ||| ||||| |||||||||||||| || | | Sbjct 212248 GCAAAAAGATCACGCACGCGAGATGGACCAACACCGACAAACATCTCCACGAATTCAGAA 212189 Query 14352 CGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGG 14411 | | | ||| || | ||| || ||| |||||||| || |||| ||| || | | Sbjct 212188 CCACTG-ACACTGTA-GAAAGGAACGCCCGATTCACCAGCTGTGGCCTTGGCCAGCAACG 212131 Query 14412 TCTTCCCCGTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTGC 14471 |||| || || || || |||| | | |||||||| || ||| | |||||| || Sbjct 212130 TCTTACCGGTACCCGGGGGTCCTGATAAGATAGCACCACGAGGAATCTTCGCACCA-AGC 212072 Query 14472 CAAAGTAGC-GTTCAGGTTGTTTAAGGAAGTCCACGATTTCTTCCAATTCATCCTTCGCG 14530 | | | | | ||||||| || |||||| |||| ||| | |||| |||| || Sbjct 212071 CTTTGGAACTGCTCAGGTTTCTTGAGGAAGCTAACGAATTCCATAATTTCAACCTTGGCT 212012 Query 14531 GCGTCGATGCCTTCAACGTCA 14551 |||| ||||| |||||||| Sbjct 212011 TCGTCCATGCCAGCAACGTCA 211991 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618397699635560