Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq3934 150 2e-31 seq2228 114 1e-20 >seq3934 Length=413549 Score = 150 bits (166), Expect = 2e-31 Identities = 360/542 (66%), Gaps = 13/542 (2%) Strand=Plus/Plus Query 79351 AGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCC 79410 |||| ||| || ||| |||||||||| || |||||| || || ||| |||| || || Sbjct 408800 AGGT-CCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTCCAAAGAGCA 408858 Query 79411 GTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAG 79470 |||||| || ||| | | ||||| | || ||||| ||| || || | ||| Sbjct 408859 AGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCGTGGTTTTTACGGAGATCTAAAAAC 408918 Query 79471 TCCATGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCG 79530 || | ||| |||| |||||| || || ||||| ||||| || | || || ||| | Sbjct 408919 TCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTG 408978 Query 79531 CCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCG 79590 || || |||| ||| || || || || ||||| || || ||||||||||| ||||| ||| Sbjct 408979 CCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCG 409038 Query 79591 TCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGG 79650 | | | |||||| || || || | || |||| |||| | ||| ||| Sbjct 409039 TTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAA--TACGA----TGG 409092 Query 79651 AT------TCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCG 79704 || ||||| || || | |||||| || | ||||| ||| || || ||| Sbjct 409093 ATATTAAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCG 409152 Query 79705 TAGATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGG 79764 ||||| || ||||| || ||||||||| | | || || ||| | ||||||||| Sbjct 409153 TAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGT 409212 Query 79765 TTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAGAACTTTTGGCTCATC 79824 | || || |||||||| || || || | || || || || | || || |||| Sbjct 409213 TGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGAGACATC 409272 Query 79825 AGATCGTACGTCTCCTTGACGCGCGGGAGGTCGTCGCCGTGGATGCCGACCGCGACGCGC 79884 |||| ||||| || | | | | ||| ||||| || ||||| ||||| || ||| Sbjct 409273 AGATTATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACGC 409332 Query 79885 AT 79886 || Sbjct 409333 AT 409334 Score = 140 bits (154), Expect = 4e-28 Identities = 386/589 (66%), Gaps = 16/589 (3%) Strand=Plus/Minus Query 19118 ATGCGAGTCGCGGTCGGCATCCATGGCGACGACCTCCCGCGAGTCCG--CGAGACATACG 19175 ||||| || ||||| ||||| |||||||| ||| | | || || ||| || || Sbjct 409334 ATGCGTGTTGCGGTTGGCATTCATGGCGAAGACATT--GAGAAGGCGATCGAAACGTATA 409277 Query 19176 ACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGA 19235 | |||||| ||||| | || || || || | || || ||||||||||| || || Sbjct 409276 ATCTGATGTCTCAGAAATATTTTACACATGCTTCCCCCACTCTTTTCAACGCGGGAACAC 409217 Query 19236 ACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCA 19295 | || |||||| | |||||| || | | ||||||||| || ||||| || || | Sbjct 409216 CGCAACCACAGATGGCCTCCTGTTTTCTCATTGATATGAAGGAAGATAGCATCGATGGTA 409157 Query 19296 TCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGG----- 19350 ||||||| || || ||| ||||| | || |||||| | || |||||||| Sbjct 409156 TCTACGATACTCTAAAGACCTGCGCTCTGATTTCCAAGACAGCTGGCGGTATCGGTCTTA 409097 Query 19351 -GATCCACTGCTCGAATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAG 19409 ||||| ||| ||| || ||| ||| | || || || ||||| Sbjct 409096 ATATCCA----TCG--TATTCGCGCGACTGGCTCCTACATTGCAGGAACAAACGGCTCCT 409043 Query 19410 CCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGG 19469 | |||| |||||||| |||||||| ||||| ||||| || || | || ||| |||| | Sbjct 409042 CTAACGGAATCGTCCCCATGCTCCGTGTCTTTAACAATACAGCTCGATATGTCGACCAAG 408983 Query 19470 GGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCA 19529 | ||| |||||| ||| | || ||||| || || || || |||||| | || || Sbjct 408982 GTGGCAACAAACGGCCTGGCGCCTTTGCCATTTATCTTGAACCTTGGCACTCCGATATCT 408923 Query 19530 TGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCT 19589 | || || | || || || ||||| || | ||||| | | || || |||| Sbjct 408922 TCGAGTTTTTAGATCTCCGTAAAAACCACGGAAAGGAGGAAGTAAGAGCCCGTGATCTCT 408863 Query 19590 TCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGC 19649 || || | |||| || || || |||||| || |||||||||| ||| || ||| Sbjct 408862 TCCTTGCTCTTTGGACCCCCGATCTGTTCATGAAGCGGGTTGAGAAGAACGGCGATTGGA 408803 Query 19650 ACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGA 19698 | || | || || ||||| | || || | ||||| ||||| || Sbjct 408802 CCTTGTTTTGTCCAAACGAAGCGTCAGGATTAGCTGACGTTTACGGTGA 408754 >seq2228 Length=283306 Score = 114 bits (126), Expect = 1e-20 Identities = 113/146 (77%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || ||||| || | || |||||| ||| ||||| ||||||||| |||||| ||| Sbjct 201449 TTCGCCCAACGCCTGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTC 201508 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 | ||||||||||| | || || |||||||| ||||| || || | ||| || || || Sbjct 201509 GCTTCTATTTTCTGGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAA 201568 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCA 60118 |||||||||| |||||||| ||||| Sbjct 201569 TTGATTTCCCGTGACGAGGGTCTCCA 201594 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548491538827440