Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2228 120 3e-22 seq4416 102 9e-17 seq3760 86.0 7e-12 >seq2228 Length=283306 Score = 120 bits (132), Expect = 3e-22 Identities = 107/133 (80%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 74784 ATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATG 74843 ||||||||||||||||| | || || |||||||| ||||| ||||||||||| || || Sbjct 201573 ATCAATTCATTCGAAAAAGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAATA 201514 Query 74844 GCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGC 74903 | | ||| || |||||||||||||| ||||| || |||||||| || |||||||| Sbjct 201513 GAAGCGAAAGAGCCACTGAAGAAGATACCTTCAACGGCTGCAAAGGCAACCAGGCGTTGG 201454 Query 74904 GCGAACGGTGCAT 74916 ||||| |||| || Sbjct 201453 GCGAA-GGTGGAT 201442 >seq4416 Length=140045 Score = 102 bits (112), Expect = 9e-17 Identities = 189/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 152797 CCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAGGTCACGTAGTGAC 152856 |||||| | ||| || ||||||||||| ||| |||| || || ||| |||| |||| Sbjct 48784 CCGTCATGGTCCTGATCAGTCATGATCATGAGATGACCATAACGAAGGCCACG-AGTG-T 48727 Query 152857 CCGTAGA--CCTTTCCATGTTGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATTCCTCAT 152914 | ||| | |||| |||||| || ||||||| ||||||| ||| || |||| | Sbjct 48726 CTGTATACTCCTTCTTATGTTGTAGGCCGAGGAAATTTTTGATGTTTTGAATCTCCTGGT 48667 Query 152915 TATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAA 152974 | | || | || | || | ||||| || |||||| || ||||||| || | ||| | Sbjct 48666 TCTTGGAAATTTGGTCAACGGAAGCATCACGGACATTGAGCAGCTTTCCTCGCAATGGGA 48607 Query 152975 ACACGCCGAACGCGTTGCGGCCTACAAC-GCTCAGACCGGCAATAGCAAGGGCTTTCGCC 153033 | ||||| || | | | || || || | || | || || || ||||| |||| || Sbjct 48606 AAACGCCAAAGAGATCGGGTCCAACTACAGATCTG-CCCGCCATTGCAAGACCTTTGGCG 48548 Query 153034 GAGTCACCCTCGGTGATAATAAGCGTACAGT 153064 || || || ||||||| ||| ||||| |||| Sbjct 48547 GAATCCCCTTCGGTGAGAATCAGCGTGCAGT 48517 >seq3760 Length=8275 Score = 86.0 bits (94), Expect = 7e-12 Identities = 133/185 (72%), Gaps = 4/185 (2%) Strand=Plus/Plus Query 124712 CTCGTGGTTGAACAGAATGCCAGTACAC-GCAAACATCCCGTACGACTCGCGGTAGTTTT 124770 ||||||||||||||| ||||| | ||| | || || || || || |||||||| Sbjct 5501 CTCGTGGTTGAACAGGATGCC-GCTCACTCCGAAGATGCCATAGCTTTCACGGTAGTTCA 5559 Query 124771 TCGTCATCCAATACCCAAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGG 124830 |||||||| | || ||||||||| |||||| ||||| || || |||||||| || | Sbjct 5560 CAGTCATCCAGTGGGCATAGAGCTTGGCCACGCCGTAGGGACTGCGCGGGTAGAAAGGCG 5619 Query 124831 TGTTTTC-ATTTTGGGTAGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGA 124889 || |||| | || || | | ||| | | || |||||||| || || | ||||||| Sbjct 5620 TGCTTTCGACTTGCGGCACG-GCCTGCACCAGACCGAACATCTCGGACGTGCTCGCCTGA 5678 Query 124890 TAGAA 124894 || || Sbjct 5679 TAAAA 5683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547182818189800