Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq3060 167 3e-36 seq4836 147 2e-30 seq2228 125 8e-24 seq1315 98.7 1e-15 seq3934 89.7 6e-13 seq4416 84.2 2e-11 >seq3060 Length=205498 Score = 167 bits (184), Expect = 3e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| | || |||||||| || || |||||||||||||| ||| Sbjct 122134 ATGCAGATTTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGAGTCCGGT 122193 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||| | || || || |||||||||||||| ||||| |||||| Sbjct 122194 GATACTATCGACAATGTGAAGACAAAGATCCAAGACAAGGAGGGAATCCCTCCTGACCAG 122253 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || || | || || |||||||| || || || |||| ||||| || | || || || Sbjct 122254 CAACGCTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACTCTTTCGGATTACAAC 122313 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||||| || ||||| | || | || ||||| ||||| Sbjct 122314 ATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGCCTTCGTGGTGG 122360 Score = 167 bits (184), Expect = 3e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| || || || |||||||| ||||| |||||||| || |||| ||| | Sbjct 122438 GTCAAGACTCTCACGGGAAAGACTATCACTCTCGAGGTTGAATCCTCCGATACCATCGAT 122497 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || |||| | || |||||||| |||||||| || |||||||| ||||| || | ||| Sbjct 122498 AACGTGAAAACCAAGATTCAGGATAAGGAGGGCATCCCTCCAGATCAGCAACGCTTGATT 122557 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 || ||||| || ||||| ||||||| ||| || || | || ||||| ||||||||||| Sbjct 122558 TTCGCTGGCAAACAACTTGAGGATGGTCGCACTCTCTCTGATTATAACATCCAAAAGGAA 122617 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || ||||| ||||| ||| | ||||| || ||||| Sbjct 122618 TCTACTCTCCATCTTGTCCTCCGTCTCCGAGGTGG 122652 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| ||||| | ||||| || || || || ||||| || ||||| Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | || |||| ||||| ||||||||||||||||| ||||||||| Sbjct 122714 GACACAATCGACAACGTCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 122773 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | |||||||| || || || |||||||| | ||| || ||| ||||||| || Sbjct 122774 CAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTACAAC 122833 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || || || || || ||||| ||| | || | |||||||| Sbjct 122834 ATTCAGAAAGAGTCTACACTGCATCTCGTCCTTCGCTTACGCGGTGG 122880 Score = 140 bits (154), Expect = 4e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| ||||| ||||| | ||||||||||||||||| | ||||| ||||| Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | |||||||| || || || || || || || ||||| Sbjct 122942 GACACGATCGACAACGTTAAGACGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAA 123001 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| || || |||||||| ||||| || ||||||| ||| || || | || ||||| Sbjct 123002 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAAC 123061 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| |||||| |||||| ||| | || ||| | | ||||| || Sbjct 123062 ATCCAGAAGGAAAGCACTCTGCATTTGGTATTGAGATTGCGCGGCGG 123108 >seq4836 Length=199183 Score = 147 bits (162), Expect = 2e-30 Identities = 144/183 (79%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 27414 CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCAT 27473 ||| |||||||| || |||||||||||||| || ||||| || ||||| | || | || Sbjct 162768 CTTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAAGTGGAGTCCAGCGACACGAT 162827 Query 27474 TGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCT 27533 | ||| ||||| ||||| ||||||||||| || |||||||| |||||||||||| | Sbjct 162828 CGACAATGTGAAGAGCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTT 162887 Query 27534 AATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAATGTCCAAA 27592 ||||| ||||| ||||| |||||||| | ||||| | ||| || || ||| |||||| Sbjct 162888 GATTTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACTTTGAGC-GATTACAATATCCAAA 162946 Query 27593 AGG 27595 ||| Sbjct 162947 AGG 162949 >seq2228 Length=283306 Score = 125 bits (138), Expect = 8e-24 Identities = 329/497 (66%), Gaps = 5/497 (1%) Strand=Plus/Plus Query 64662 TAAAAAGGCTGAATGGGCCATCCGGTGGATGAAT--CGTGGG-TCGTCGTTTGGTCAGCG 64718 ||| |||||||| |||||||| || ||||| | | || || | || | || || Sbjct 201400 TAAGAAGGCTGATTGGGCCATTCGATGGATCCAAGACAAGGAATCCACCTTCGCCCAACG 201459 Query 64719 TCTCGCAGCTTTTGCCTGTGTGGAAGGAATTTTCTTTTCTGGGTCATTCTGTTCTATTTT 64778 || | || ||||| || ||||| || ||||| ||| || ||| ||||||||| Sbjct 201460 CCTGGTTGCCTTTGCAGCCGTTGAAGGTATCTTCTTCAGTGGCTCTTTCGCTTCTATTTT 201519 Query 64779 CTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATCTCTCG 64838 |||| | || || || ||||| ||||| ||||| | |||||||| || |||| || || Sbjct 201520 CTGGTTGAAGAAACGTGGCCTTATGCCCGGTCTCACTTTTTCGAATGAATTGATTTCCCG 201579 Query 64839 GGACGAGGGGCTCCACCAAGAATTTGCGGTTACCCTGTTCAGCCACCTCAAGGA-CAAAC 64897 |||||||| |||||| || ||||| ||| ||| ||||||| | | | Sbjct 201580 TGACGAGGGTCTCCACACCGACTTTGCCTGCCTCCTCTTCTCCCACCTCCGCCATCGCCC 201639 Query 64898 CATCACATGGGACTATAATTGATATAGTAAAATCGGCTGTAGAAATTGAAAAGGAATTCA 64957 | | | | || | | | | || | | | ||| || || ||||| ||||||||| Sbjct 201640 CGGCCCTTCGGCCGTTGA-GGCCATCATCACAGAGGCAGTTGAGATTGAGAAGGAATTCT 201698 Query 64958 TTACTGCCGCGCTTCCGTGTCGTCTCATCGGCATGGATGCCGATAAGATGAAACAGTATA 65017 | |||| || ||||| ||| || | |||||| | ||| | ||| || |||| Sbjct 201699 TAACTGATGCTCTTCCATGTGCCCTTCTTGGCATGAACGCCAAGCTCATGTGCCAATATA 201758 Query 65018 TCGAATTTGTAGCAGATCGCCTGCTTACTCAGTTTGGTATTAAGCCCTACTGGAATTCTT 65077 |||| ||||| || || | |||||| | || || | || | || ||| | Sbjct 201759 TCGAGTTTGTTGCCGACAGACTGCTTGTTGCTTTGGGCAACAAAAAGTTCTACAATGCCA 201818 Query 65078 CAAATCCATTTGACTGGATGGAGACGATCAGCCTGGAGGGGAAGACTAACTTTTTTGAAA 65137 | || |||||||||| ||||| | ||| ||| || ||||| ||||| || || | Sbjct 201819 CCAACCCATTTGACTTTATGGATAACATCTCGTTGGCCGGCAAGACCAACTTCTTCGAGA 201878 Query 65138 AGAGGGTAGGTGATTAC 65154 || |||| ||||||||| Sbjct 201879 AGCGGGTTGGTGATTAC 201895 >seq1315 Length=3472 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 24758 GGTGCAGGAGACGCCACAGTCGGAGACCACTCCATTTTATCCGCGAAGCCCGTATGGGGT 24817 ||||||||| || || ||| |||| ||| ||||||||||| ||| || |||| ||| Sbjct 1586 GGTGCAGGAAACACCGCAGCGCGAGAACACACCATTTTATCCCCGATCACCATATGCGGT 1645 Query 24818 CTCAAAGGTGTTCGCGTACTGGATAACCAAGAACTACCGTGAGGCCCATGGGATATATGC 24877 ||||| | | ||| || ||||| || ||||||||| || ||| |||| ||||| || Sbjct 1646 AGCAAAGCTATACGCATATTGGATGACGGTGAACTACCGAGAAGCCTATGGCATATACGC 1705 Query 24878 ATGCAACGGAATTCTGTTCAACCATGA 24904 ||||| || || ||||| || || || Sbjct 1706 TTGCAATGGCATCCTGTTTAATCACGA 1732 >seq3934 Length=413549 Score = 89.7 bits (98), Expect = 6e-13 Identities = 363/566 (64%), Gaps = 17/566 (3%) Strand=Plus/Plus Query 81187 TCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCA 81246 ||||| || || | || | ||| ||| || ||||| || ||||||||| || Sbjct 408784 TCGTTTGGACAAAACAAGGTCCAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCG 408843 Query 81247 GGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGG 81306 ||| |||| || || ||| || || ||| | | ||||| | || ||||| Sbjct 408844 GGGGTCCAAAGAGCAAGGAAGAGATCACGGGCTCTTACTTCCTCCTTTCCGTGGTTTTTA 408903 Query 81307 CGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGAC 81366 || | || | ||| || | ||| || | ||||| || || ||||| | ||| | | | Sbjct 408904 CGGAGATCTAAAAACTCGAAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGG-C 408962 Query 81367 CCCTTGCGACG------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGC 81420 || || || |||||| |||| ||| || || || || |||||| ||||| Sbjct 408963 GCCAGGC--CGTTTGTTGCCACCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGG 409020 Query 81421 AACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCG 81480 | ||| |||| ||| || | || ||||| || || | || || || | ||| Sbjct 409021 AGCATGGGGACGATTCCGTTAGAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCG 409080 Query 81481 CGCA--CCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACC 81538 || | | || ||| ||||||||| || || | ||| |||||| |||| || Sbjct 409081 CGAATACGATGGATATT--AAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGG 409138 Query 81539 GGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAACAGC 81598 || | || || || || || ||||||||||||| ||||| |||| | |||||| Sbjct 409139 TCTTTAGAGTATCGTAGATACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGG 409198 Query 81599 TTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAAT 81658 | |||||| || || || || ||||| || || |||| || || | |||| Sbjct 409199 AGGCCATCTGTGGTTGCGGTGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAAT 409258 Query 81659 AACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGT--GGAATATCGTCACCGTGAAT 81716 | | |||||||| | ||| ||||| | ||| | ||| || || || ||||| Sbjct 409259 ATTTCTGAGACATCAGATTATACGTTTCGAT--CGCCTTCTCAATGTCTTCGCCATGAAT 409316 Query 81717 ACCGATAGCTACACGCATAAACATGT 81742 || | || |||||||||| ||||| Sbjct 409317 GCCAACCGCAACACGCATAATCATGT 409342 Score = 86.0 bits (94), Expect = 7e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 80905 AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTG 80964 |||||||||| |||||| || || || || || | | || |||||| |||||||||| Sbjct 408450 AGGGACGCCAAATTGCAAACTGCGACTTCGTCCGGCGCGGTGTACTCGATGATTTCCGTG 408509 Query 80965 CACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCG 81024 ||||| || || | ||| || || |||||||| ||||| |||| |||||| || Sbjct 408510 CACAAGTTGGAGCTCCGAATAGTTCCAAGGTTTTTTTGGTTACTCTTGCGGTTGCACGCA 408569 Query 81025 TCCTTGTAGCACATGTACGGGGTACCGGTCTC 81056 || || || |||| | ||| | || ||||| Sbjct 408570 TCTTTATAAAGCATGAAGGGGTTCCCAGTCTC 408601 >seq4416 Length=140045 Score = 84.2 bits (92), Expect = 2e-11 Identities = 191/285 (67%), Gaps = 2/285 (1%) Strand=Plus/Plus Query 31255 TGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTTGCTATTGCTGGCTTGAGT 31314 |||||||| ||| | ||||| || || || || || | ||||| || || ||| | Sbjct 48519 TGCACGCTGATTCTCACCGAAGGGGATTCCGCCAAAGGTCTTGCAATGGCGGGCAGATCT 48578 Query 31315 GTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGCAAGCCGCGTAACGTTCGT 31374 || || || | | || || || || || || | ||||| |||| || || || ||| Sbjct 48579 GTAGTTGGACCCGATCTCTTTGGCGTTTTCCCATTGCGAGGAAAGCTGCTCAATGTCCGT 48638 Query 31375 GACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCCAACCTGAAAAAGATCCTC 31434 || || |||||| | || || | | || | ||| || ||| | ||||| ||||| Sbjct 48639 GATGCTTCCGTTGACCAAATTTCCAAGAACCAGGAGATTCAAAACATCAAAAATTTCCTC 48698 Query 31435 GGGCTTCAGCATGGCAAGGTATATA-ATTCACTGAGAGAATTGCGGTACGGTCGCCTCAT 31493 || || || ||| |||| |||| | |||| | || || || |||| ||||| Sbjct 48699 GGCCTACAACATAAGAAGGAGTATACAGACACTCGTGGCCTT-CGTTATGGTCATCTCAT 48757 Query 31494 GATTATGACCGACGCAGATCTCGACGGCAGTCACATCAAGGGTCT 31538 ||| ||||| || || | |||||||||||||| || ||||| Sbjct 48758 GATCATGACTGATCAGGACCATGACGGCAGTCACATTAAAGGTCT 48802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570275817803120