Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3060 122 8e-23 seq4836 87.8 2e-12 >seq3060 Length=205498 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||||| || | || || |||||||| || | || Sbjct 122654 ATGCAGATTTTTGTGAAGACCTTGACCGGAAAAACAATCACGCTTGAAGTAGAGTCTTCA 122713 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | || || | |||||| || ||||||||||| || || || ||||| || || Sbjct 122714 GACACAATCGACAACGTCAAAACTAAGATTCAAGACAAGGAGGGAATTCCACCAGACCAG 122773 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||||| || | ||||||||||| | || ||| || || | || || |||||| Sbjct 122774 CAGCGTTTGATTTTTGCCGGCAAACAGCTCGAGGACGGTCGCACGCTATCAGACTACAAC 122833 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || | ||| | || | || || || ||||| || Sbjct 122834 ATTCAGAAAGAGTCTACACTGCATCTCGTCCTTCGCTTACGCGGTGGTAT 122883 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || | ||||||||| ||||||| | || || || |||| Sbjct 122882 ATGCAAATTTTTGTTAAGACATTAACCGGCAAGACTATTACATTGGAGGTCGAGTCGTCA 122941 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | || || ||||||||||| |||||||| || |||||||| ||| Sbjct 122942 GACACGATCGACAACGTTAAGACGAAAATTCAAGATAAAGAAGGTATCCCACCCGACCAA 123001 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||| | || | || || || || | || || || ||| | |||||||| ||| Sbjct 123002 CAGCGACTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACACTCTCCGATTATAAC 123061 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 || || ||||| || | |||||||| ||| | ||||| || |||| Sbjct 123062 ATCCAGAAGGAAAGCACTCTGCATTTGGTATTGAGATTGCGCGGCGGCA 123110 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || ||| |||| |||||| | || || ||||| || || |||| Sbjct 122134 ATGCAGATTTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTTGAGGTTGA---GTCC 122190 Query 27048 G---ACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGAT 27104 | | | || || | || || ||| || |||||||| || || || || || || Sbjct 122191 GGTGATACTATCGACAATGTGAAGACAAAGATCCAAGACAAGGAGGGAATCCCTCCTGAC 122250 Query 27105 CAACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTAC 27164 || || || || || | ||| || ||||| | ||||| | || |||| |||||| Sbjct 122251 CAGCAACGCTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGTACTCTTTCGGATTAC 122310 Query 27165 AACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || ||||| || ||| | || |||||| | || | || ||||| || Sbjct 122311 AACATCCAGAAGGAATCTACCCTTCACTTGGTTCTCCGCCTTCGTGGTGGTAT 122363 >seq4836 Length=199183 Score = 87.8 bits (96), Expect = 2e-12 Identities = 128/181 (71%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || || || ||||||||| |||| || ||||||||||| | |||| |||| Sbjct 162769 TTCGTCAAGACCCTCACCGGCAAGACTATCACCCTTGAAGTGGAGTCCAGCGACACGATC 162828 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | || || ||||| || ||||| |||||||| || || || || |||||||| Sbjct 162829 GACAATGTGAAGAGCAAAATCCAGGACAAGGAAGGCATTCCTCCTGACCAGCAGCGTTTG 162888 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||| || || || | || ||| | || | ||||||||| || |||||| Sbjct 162889 ATTTTCGCTGGAAAGCAGCTCGAGGACGGCCGTACTTTGAGCGATTACAATATCCAAAAG 162948 Query 27177 G 27177 | Sbjct 162949 G 162949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434892027635520