Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq3761 149 2e-31 seq3296 105 2e-18 >seq3761 Length=1757 Score = 149 bits (164), Expect = 2e-31 Identities = 179/237 (76%), Gaps = 10/237 (4%) Strand=Plus/Minus Query 40090 GCCGAAGGTCCCGATCTG--TG-CGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCG 40146 |||||||||| ||||||| || || ||| | ||||| |||||| || | |||||| Sbjct 698 GCCGAAGGTCGCGATCTGGCTGACGGCCTCG-CGGCC--GTACTTGTCCTTCACGTACTC 642 Query 40147 GATGACCTCGCCGCGAC--GCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACG 40204 ||||||| | | || ||| | || |||||||||||| | ||| ||||| |||||| Sbjct 641 GATGACCCGGTCCCGGTTGGCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACG 584 Query 40205 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTG 40264 ||||| ||||||||||| |||||||| | || || || || ||||||||||||||| Sbjct 583 CGCTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTGGAGGGGATCGAGGTCGGTG 524 Query 40265 ATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACC 40321 ||| ||| | ||||| |||||||| ||||| | || || || || || |||||| Sbjct 523 ATCTTGAGCGAATAGGCCACCAGCGATCCGGCGCCTGATCCACGGCCCGGGCCGACC 467 Score = 113 bits (124), Expect = 1e-20 Identities = 103/130 (79%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 39211 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCC 39270 || ||||| |||||| ||||||||||||||| ||||| ||||||||||| || ||| Sbjct 1622 CTGGGCCATCTCCTCGGCCTTCTTCTTGCCCATCGCCCGGCGCAGCAGGTCCGCGCCGCC 1563 Query 39271 CAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 39330 ||| ||||||| | ||||||||||| | || | |||||| |||||||||| |||| Sbjct 1562 CAGCGTGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCATGAT 1503 Query 39331 CCCGTACGTC 39340 ||||| ||| Sbjct 1502 TCCGTAGGTC 1493 >seq3296 Length=739 Score = 105 bits (116), Expect = 2e-18 Identities = 225/333 (68%), Gaps = 11/333 (3%) Strand=Plus/Plus Query 3422 CTCCAGCCGGGCGACGAGATCGTCCTCGGCTTCGACGGTGGCAAGACGCACGACGCGACC 3481 || ||||| |||||| |||||| |||| |||||||| |||||||| |||||||||| Sbjct 157 CTTCAGCCCGGCGACACCATCGTCATCGGGTTCGACGGCGGCAAGACAGACGACGCGACA 216 Query 3482 GCCCTGGTCGCGATCCGGGTCAGGGACATGGCCGCCTTCCTGCTCGGCCTCTGGGAGAAG 3541 || | |||| | || ||| ||| | ||| | |||||| ||||||||||| Sbjct 217 GCGATCATCGCTCTTCGCGTCGCCGACCGGCTCGCGCAGCCGCTCGGGATCTGGGAGAAG 276 Query 3542 CCAGACGGGCCGAACGGTGACAACTGGGAGGTCCCTCGCTGGGAGGTCGACTCCGAG--- 3598 || || || || ||| | |||||||||||| | || | || | |||| Sbjct 277 CCCGAGGGCCCTCTCGGCAAGAACTGGGAGGTC---GACAGGATCGCCGTCGGCGAGCTC 333 Query 3599 GTGCACAGCGCCTTCAAGCAGTTCAAGGTCCAGGCGTTCTACGCCGACGTTGCGCTGTGG 3658 || | ||||||| | || | | ||| | |||| ||||||||| ||| ||| Sbjct 334 GTCGAGCACGCCTTCGGGACGTACGACGTCGTCGGCTTCTTCGCCGACGTCAAGCTCTGG 393 Query 3659 GAGTCGTACATCTCCGAGTGGTCCGAGACCTACGGAGACGGCCTCGCGGTGAAGTCG-CC 3717 ||||| |||||| | ||||| |||| |||| ||| | ||| ||||||| || || Sbjct 394 GAGTCCTACATCGACACCTGGTCGGAGAAGTACGCCGACCGGCTCCTGGTGAAGGCGACC 453 Query 3718 GGTCGGTCGCGATGCGATCGGCTTCGACATGCG 3750 ||||| || |||||| ||||||||| Sbjct 454 CCGAAGTCGC----CGGTCGGCTACGACATGCG 482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160397159689074