Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015-
11-03] 4,851 sequences; 27,454,949 total letters
Query= NC_028827.1
Length=50165
Score E
Sequences producing significant alignments: (Bits) Value
seq3761 149 2e-31
seq3296 105 2e-18
>seq3761
Length=1757
Score = 149 bits (164), Expect = 2e-31
Identities = 179/237 (76%), Gaps = 10/237 (4%)
Strand=Plus/Minus
Query 40090 GCCGAAGGTCCCGATCTG--TG-CGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCG 40146
|||||||||| ||||||| || || ||| | ||||| |||||| || | ||||||
Sbjct 698 GCCGAAGGTCGCGATCTGGCTGACGGCCTCG-CGGCC--GTACTTGTCCTTCACGTACTC 642
Query 40147 GATGACCTCGCCGCGAC--GCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACG 40204
||||||| | | || ||| | || |||||||||||| | ||| ||||| ||||||
Sbjct 641 GATGACCCGGTCCCGGTTGGCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACG 584
Query 40205 CGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTG 40264
||||| ||||||||||| |||||||| | || || || || |||||||||||||||
Sbjct 583 CGCTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTGGAGGGGATCGAGGTCGGTG 524
Query 40265 ATCCCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACC 40321
||| ||| | ||||| |||||||| ||||| | || || || || || ||||||
Sbjct 523 ATCTTGAGCGAATAGGCCACCAGCGATCCGGCGCCTGATCCACGGCCCGGGCCGACC 467
Score = 113 bits (124), Expect = 1e-20
Identities = 103/130 (79%), Gaps = 0/130 (0%)
Strand=Plus/Minus
Query 39211 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCC 39270
|| ||||| |||||| ||||||||||||||| ||||| ||||||||||| || |||
Sbjct 1622 CTGGGCCATCTCCTCGGCCTTCTTCTTGCCCATCGCCCGGCGCAGCAGGTCCGCGCCGCC 1563
Query 39271 CAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 39330
||| ||||||| | ||||||||||| | || | |||||| |||||||||| ||||
Sbjct 1562 CAGCGTGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCATGAT 1503
Query 39331 CCCGTACGTC 39340
||||| |||
Sbjct 1502 TCCGTAGGTC 1493
>seq3296
Length=739
Score = 105 bits (116), Expect = 2e-18
Identities = 225/333 (68%), Gaps = 11/333 (3%)
Strand=Plus/Plus
Query 3422 CTCCAGCCGGGCGACGAGATCGTCCTCGGCTTCGACGGTGGCAAGACGCACGACGCGACC 3481
|| ||||| |||||| |||||| |||| |||||||| |||||||| ||||||||||
Sbjct 157 CTTCAGCCCGGCGACACCATCGTCATCGGGTTCGACGGCGGCAAGACAGACGACGCGACA 216
Query 3482 GCCCTGGTCGCGATCCGGGTCAGGGACATGGCCGCCTTCCTGCTCGGCCTCTGGGAGAAG 3541
|| | |||| | || ||| ||| | ||| | |||||| |||||||||||
Sbjct 217 GCGATCATCGCTCTTCGCGTCGCCGACCGGCTCGCGCAGCCGCTCGGGATCTGGGAGAAG 276
Query 3542 CCAGACGGGCCGAACGGTGACAACTGGGAGGTCCCTCGCTGGGAGGTCGACTCCGAG--- 3598
|| || || || ||| | |||||||||||| | || | || | ||||
Sbjct 277 CCCGAGGGCCCTCTCGGCAAGAACTGGGAGGTC---GACAGGATCGCCGTCGGCGAGCTC 333
Query 3599 GTGCACAGCGCCTTCAAGCAGTTCAAGGTCCAGGCGTTCTACGCCGACGTTGCGCTGTGG 3658
|| | ||||||| | || | | ||| | |||| ||||||||| ||| |||
Sbjct 334 GTCGAGCACGCCTTCGGGACGTACGACGTCGTCGGCTTCTTCGCCGACGTCAAGCTCTGG 393
Query 3659 GAGTCGTACATCTCCGAGTGGTCCGAGACCTACGGAGACGGCCTCGCGGTGAAGTCG-CC 3717
||||| |||||| | ||||| |||| |||| ||| | ||| ||||||| || ||
Sbjct 394 GAGTCCTACATCGACACCTGGTCGGAGAAGTACGCCGACCGGCTCCTGGTGAAGGCGACC 453
Query 3718 GGTCGGTCGCGATGCGATCGGCTTCGACATGCG 3750
||||| || |||||| |||||||||
Sbjct 454 CCGAAGTCGC----CGGTCGGCTACGACATGCG 482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 160397159689074
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |