Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq3296 125 2e-24 seq3761 109 2e-19 >seq3296 Length=739 Score = 125 bits (138), Expect = 2e-24 Identities = 352/534 (66%), Gaps = 15/534 (3%) Strand=Plus/Plus Query 3420 CTCCAGCCGGGCGACGAGATCGTCCTCGGCTTCGACGGTGGCAAGACGCACGACGCGACC 3479 || ||||| |||||| |||||| |||| |||||||| |||||||| |||||||||| Sbjct 157 CTTCAGCCCGGCGACACCATCGTCATCGGGTTCGACGGCGGCAAGACAGACGACGCGACA 216 Query 3480 GCGCTGGTCGCGATCCGCGTGCGTGACATGGCCGCCTTCCTGCTCGGCCTCTGGGAGAAG 3539 ||| | |||| | ||||| ||| | ||| | |||||| ||||||||||| Sbjct 217 GCGATCATCGCTCTTCGCGTCGCCGACCGGCTCGCGCAGCCGCTCGGGATCTGGGAGAAG 276 Query 3540 CCGGATGGCCCGCAGGGTGACAACTGGGAGGTTCCTCG-CTGGGAGGTTGACTCCGAG-- 3596 || || ||||| | || | |||||||||| ||| | || | | | |||| Sbjct 277 CCCGAGGGCCCTCTCGGCAAGAACTGGGAGG----TCGACAGGATCGCCGTCGGCGAGCT 332 Query 3597 -GTGCACAGCGCCTTCAAGCAGTTCAAGGT-GCAGGCGTTCTACGCCGACGTTGCGCTGT 3654 || | ||||||| | || | | || | ||| |||| ||||||||| ||| | Sbjct 333 CGTCGAGCACGCCTTCGGGACGTACGACGTCGTCGGC-TTCTTCGCCGACGTCAAGCTCT 391 Query 3655 GGGAGTCCTACATCTCCGAGTGGTCCGAGACCTACGGGGACAGCCTGGTGGTGAAGTCG- 3713 |||||||||||||| | ||||| |||| |||| ||| | || |||||||| || Sbjct 392 GGGAGTCCTACATCGACACCTGGTCGGAGAAGTACGCCGACCGGCTCCTGGTGAAGGCGA 451 Query 3714 CCGGTCGGTCGCGACGCGATCGGCTTCGACATGCGCTCCTCGCTGAAGCTGGTGACCATG 3773 || ||||| || |||||| |||||||||| | | | || | | |||| | Sbjct 452 CCCCGAAGTCGC----CGGTCGGCTACGACATGCGCGGCCACCAGCAGGAGCTCACCAAG 507 Query 3774 GCGCATGAGCGCCTGATGCGGTCCATCTTCGACGGCAAGCTCGCCCACGACGGCGACCGC 3833 || || ||| | | | | ||| ||| || || ||| || | | | Sbjct 508 GCCACCGAAGCCCTCGTCCAGGCGATCGAGGACCAGCAGATCCGGCACACCGACCATGCC 567 Query 3834 TCGCTTCGTCGGCACGCGCTGAACGCGCGTCGCCGCACCAACAACTACGGCGTGTCCTTC 3893 |||| ||||||| |||| || || ||| ||||| | ||||| |||| Sbjct 568 GCGCTGAACCGGCACGTCGGGAACTGCCGCCGGCGCCCCAACCGGTGGGGCGTCAGCTTC 627 Query 3894 GGCAAGGAGTCGAGGGAGTCGCCCCGCAAGATCGACGCCTACGCGGCGCTGATG 3947 |||||||| || ||||||||||| ||| |||||| || ||||||| || || Sbjct 628 GGCAAGGAATCCAGGGAGTCGCCGAAGAAGGTCGACGGCTTCGCGGCGTTGCTG 681 >seq3761 Length=1757 Score = 109 bits (120), Expect = 2e-19 Identities = 165/233 (71%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 38998 CCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATC 39057 ||| | ||||||||||| ||| || | ||||||||| || | |||||| ||| Sbjct 697 CCGAAGGTCGCGATCTGGCTGACGGCCTCGCGGCCGTACTTGTCCTTCACGTACTCGATG 638 Query 39058 ACGTCGCCACGGC--GACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCT 39115 || | | ||| | | | || |||||||||||| | ||| ||||| || || |||| Sbjct 637 ACCCGGTCCCGGTTGGCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACGCGCT 580 Query 39116 CAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCC 39175 | ||||||||||| |||||||| | || || ||| ||| || |||||||||||| Sbjct 579 CCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTGGAGGGGATCGAGGTCGGTGATCT 520 Query 39176 CGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGACC 39228 ||| | || || ||||||| || || | || || || || ||||||||| Sbjct 519 TGAGCGAATAGGCCACCAGCGATCCGGCGCCTGATCCACGGCCCGGGCCGACC 467 Score = 104 bits (114), Expect = 7e-18 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 38118 CTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACC 38177 || ||||| | |||||| ||||||||||||||| || || || || ||||| || || Sbjct 1622 CTGGGCCATCTCCTCGGCCTTCTTCTTGCCCATCGCCCGGCGCAGCAGGTCCGCGCCGCC 1563 Query 38178 GAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAG 38237 || ||||| ||| ||||||||||||| | || | |||||| |||||||||| |||| Sbjct 1562 CAGCGTGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCATGAT 1503 Query 38238 CCCGAAGGTC 38247 ||| ||||| Sbjct 1502 TCCGTAGGTC 1493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159705999506082