Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq3060 185 2e-41 seq2521 134 3e-26 seq4836 111 4e-19 >seq3060 Length=205498 Score = 185 bits (204), Expect = 2e-41 Identities = 161/200 (81%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 |||||||| || ||||| || || ||||||||||||||||| | || || | ||||| Sbjct 122637 AGGACAAGATGGAGAGTAGATTCCTTTTGGATGTTATAATCAGAGAGAGTGCGACCATCC 122578 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || || || ||||| ||||| || | |||||| || || ||||| | || ||||| ||| Sbjct 122577 TCAAGTTGTTTGCCAGCGAAAATCAAGCGTTGCTGATCTGGAGGGATGCCCTCCTTATCC 122518 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 || ||||| ||||||||| |||||||| || ||| |||||||||||||||||| ||| Sbjct 122517 TGAATCTTGGTTTTCACGTTATCGATGGTATCGGAGGATTCAACCTCGAGAGTGATAGTC 122458 Query 211083 TTTCCCGTGAGAGTCTTTAC 211102 ||||||||||||||||| || Sbjct 122457 TTTCCCGTGAGAGTCTTGAC 122438 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || || | |||||| || || || || |||||||| ||||||| ||| || Sbjct 122355 ACGAAGGCGGAGAACCAAGTGAAGGGTAGATTCCTTCTGGATGTTGTAATCCGAAAGAGT 122296 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| ||||| || || |||||||| | |||||| ||||||||||| | ||| Sbjct 122295 ACGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAAGCGTTGCTGGTCAGGAGGGATTCC 122236 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||||| ||||||||| ||||| || ||||| || ||| | |||||||| || Sbjct 122235 CTCCTTGTCTTGGATCTTTGTCTTCACATTGTCGATAGTATCACCGGACTCAACCTCAAG 122176 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || || | |||||| ||||| | |||||| Sbjct 122175 GGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAAATCTGCAT 122134 Score = 113 bits (124), Expect = 1e-19 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || |||||| || || |||||||||||||| | || |||| ||||| || |||||| Sbjct 123084 TGCAGAGTGCTTTCCTTCTGGATGTTATAATCGGAGAGTGTCCGACCATCCTCAAGCTGC 123025 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || || ||||| || || |||||||| || || | ||||| || || || || ||| Sbjct 123024 TTTCCAGCAAAGATGAGTCGCTGTTGGTCGGGTGGGATACCTTCTTTATCTTGAAT-TTT 122966 Query 211032 TGT-TTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGT 211090 || || ||||| ||||| ||||| || || ||||| | || || ||||| || || Sbjct 122965 CGTCTTAACGTTGTCGATCGTGTCTGACGACTCGACCTCCAATGTAATAGTCTTGCCGGT 122906 Query 211091 GAGAGTCTTTACAAACACCTGCAT 211114 | ||||| ||||| | ||||| Sbjct 122905 TAATGTCTTAACAAAAATTTGCAT 122882 >seq2521 Length=135005 Score = 134 bits (148), Expect = 3e-26 Identities = 101/119 (85%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||||||| ||||||||||| |||||||| || |||| ||||| | ||||| Sbjct 57587 AGGACGAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAGAGGGTACGGCCATCC 57646 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 || ||||||||||| |||||||| || ||||| ||||||||||||| ||||||||||| Sbjct 57647 TCGAGCTGCTTGCCGGCGAAGATGAGACGTTGCTGGTCAGGAGGAATGCCTTCCTTGTC 57705 >seq4836 Length=199183 Score = 111 bits (122), Expect = 4e-19 Identities = 134/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Minus Query 210927 TTTTGGATGTTATAATC-CGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGAT 210985 |||||||| || ||||| | ||| | | | || || || |||||||| || ||||| || Sbjct 162947 TTTTGGATATTGTAATCGCTCAAAG-TACGGCCGTCCTCGAGCTGCTTTCCAGCGAAAAT 162889 Query 210986 AAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTC 211045 | || || ||||||||||||| ||||||||||||||||| || ||||| || || Sbjct 162888 CAAACGCTGCTGGTCAGGAGGAATGCCTTCCTTGTCCTGGATTTTGCTCTTCACATTGTC 162829 Query 211046 GATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAA 211105 ||| ||||| | || || || || ||||| ||||| || ||||| ||||| || || Sbjct 162828 GATCGTGTCGCTGGACTCCACTTCAAGGGTGATAGTCTTGCCGGTGAGGGTCTTGACGAA 162769 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159079954718615