Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq4176 246 1e-60 seq1221 161 3e-35 >seq4176 Length=744 Score = 246 bits (272), Expect = 1e-60 Identities = 294/394 (75%), Gaps = 4/394 (1%) Strand=Plus/Plus Query 1560 TCCCCTTCAGCACCCAGTACGAGTACTCGCCGAACTACGCCGACTTCGGCCACACCGACG 1619 |||| ||||||| ||| ||||||||| |||||| |||| ||||||||||||||| |||| Sbjct 1 TCCCGTTCAGCAACCACTACGAGTACACGCCGAGCTACAACGACTTCGGCCACACGGACG 60 Query 1620 ACAACGCGCACTTCTTCGAGCAGATGGACTATCTGATCCCGGAACTGCTGCGCGTGACCA 1679 | ||| ||| ||||||| ||||||||| |||||| ||| | ||||| || | | | Sbjct 61 ATGACGGGCATTTCTTCGCGCAGATGGATCATCTGACGCCGAACCTGCTCCGTGCG-CTG 119 Query 1680 TCCCCGGG-CGTCTGGCCTGCATCCACGTGAAGGATCGCATCATTCCCGGCGGAATGACC 1738 | ||||| || || |||||||||||||||||||| || ||| | ||| | | ||||| Sbjct 120 GCGCCGGGCCGGCTCGCCTGCATCCACGTGAAGGACCGGATCCTGTTCGGTGCAGTGACC 179 Query 1739 GGCCTTGGCTTCCAGACCGTCTACCCCTTCCACATGGAAGTGACTCGAGC-CTTCGTCAA 1797 ||| || | | ||||||| | || |||||| ||||| |||||| || | Sbjct 180 GGCGAGGGTGTGCCGACCGTCAATCCGTTCCAC-GCCAAGTGCATCGAGCACTATATGCG 238 Query 1798 GCATGGCTGGGCCTATATGGGCATGAAGACCATCGTCACCGACGTGGTTCGCGAGAACGC 1857 || |||| | |||||||||| ||| ||||||||||||| || ||||||||| Sbjct 239 CCACGGCTTCCAGTTCATGGGCATGATCACCGTCGTCACCGACGTCGTGCGCGAGAACAA 298 Query 1858 CCAGACCTACCGCCTTTCGTGGACGGAGCAGTGCAAGGACGGCACCAAGATGGGTGTCGG 1917 ||||||||||||||| |||| | ||| | ||||||||||| |||||||| ||| Sbjct 299 CCAGACCTACCGCCTGTCGTACAGCGAGATGCTGAAGGACGGCACGAAGATGGGCTGCGG 358 Query 1918 CATGCCCGAGTACTTGCTGATCTTCCGCAAGCCG 1951 || ||||| ||| ||||| | | ||||||||| Sbjct 359 CAGCCCCGAATACGTGCTGCTGATGCGCAAGCCG 392 >seq1221 Length=9013 Score = 161 bits (178), Expect = 3e-35 Identities = 169/222 (76%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 ||| || || ||||| |||||||| ||| ||||||||| | | || || |||| || Sbjct 44 GCCATTCCGCTGCTTGCTGATGATCACCTCGGCCACGCCGGGCTCCTTGGAGTCCTTGTT 103 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| ||||| ||||| | ||||||||| |||||||||||||||||||| || || || Sbjct 104 GTAGTAGTCGTCGCGGTAGATGAACATGATGACGTCGGCGTCCTGCTCGATGGCGCCCGA 163 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 ||||||||||| ||||||||| ||||||| | ||| ||||| | ||| || Sbjct 164 TTCGCGCAGGTCGCTCATCATCGGGCGCTTGTCGGTGCGCGACTCCACGCCGCGTGACAG 223 Query 34167 CTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 |||||||||| ||||||| ||| || || ||| ||||||| Sbjct 224 CTGCGACAGCGCGATCACCGGGCAGCCCAGTTCCTTGGCCAG 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160454756370990