Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3934 275 9e-69 seq2228 100 4e-16 >seq3934 Length=413549 Score = 275 bits (304), Expect = 9e-69 Identities = 608/904 (67%), Gaps = 22/904 (2%) Strand=Plus/Plus Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984 || |||||||| || |||| ||| | ||||| | ||| ||||| || | ||| | | Sbjct 408745 TCGAATTCATCACCGTAAACGTCAGCTAATCCTGACGCTTCGTTTGGACAAAACAAGGTC 408804 Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044 || || || | | || ||| || ||||| || ||||| || |||| ||||||| || Sbjct 408805 CAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTCCAAAGAGCAAGGAAG 408864 Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTA---AGATCGAGAAACTCC 78101 ||||| |||| ||| ||| || ||||| | |||||| ||||| | |||||| Sbjct 408865 AGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGGAGATCTAAAAACTCG 408921 Query 78102 ATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCT 78161 | ||||| || ||||| ||||| ||||| || || | | ||||| ||||| || || Sbjct 408922 AAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCA 408981 Query 78162 CCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTA 78221 || || || | ||||| || || || ||| | || | | ||| || | || |||||| Sbjct 408982 CCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTA 409041 Query 78222 GATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATC 78281 || | || |||||||| | ||| || ||| | ||||||||| | ||||||| Sbjct 409042 GAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATACGA----TGGATATT 409097 Query 78282 ----CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 || || || || || |||| || || |||||||| || | ||||||||||| Sbjct 409098 AAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGAT 409157 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 78397 ||| || || || || ||| |||| | || ||||||||| | ||| || | || Sbjct 409158 ACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGTTGCGG 409217 Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457 ||||| || || || | || || || ||||| ||||| |||| | ||| | ||||| Sbjct 409218 TGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGAGACATCAGATT 409277 Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517 || ||||| || || || ||||| |||||| || ||||| |||||||| | Sbjct 409278 ATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACGCATAAT 409337 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || || || | ||| | ||| ||| ||| ||||| ||||| | || || Sbjct 409338 CATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATATGACCTCTCTAA 409397 Query 78578 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTT 78635 |||||| || || ||||| | || ||||| || | || |||| ||| | ||||| Sbjct 409398 AGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAATGGCCGAATTA 409455 Query 78636 AGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGTT--GAAATAATAGGAGATC 78693 |||| || | || ||||||| ||| | | | || ||||| ||||| | Sbjct 409456 AGTTCCTCGGCATGCTTCATAACAAT-TCCGT-AGGTTTTTTGAGAAATCATAGGCGCAG 409513 Query 78694 GTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtt 78753 || |||||| || |||| |||| | | | || || || || | || ||| Sbjct 409514 GTCGGTTATTTTTCGGGTTAATGTAGTGATAAAGGTCGTCAATGACCGAAGAGAACTGTT 409573 Query 78754 tttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAG 78813 |||| || | ||||||||| || || || |||||||| || || || |||||||| || | Sbjct 409574 TTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGATAGCATAGTCTG 409633 Query 78814 GATG 78817 | || Sbjct 409634 GGTG 409637 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || || || || |||| || || | ||||||| ||||||||||| ||||| || || Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| ||||||| ||||||||||| || | |||| |||| || | | Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 || || || | || ||| |||||||||||| || || | ||||| ||||| | || Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720 Query 76962 ATGGTCTTTTGAGGAATTTCCCA 76984 |||||| |||| | |||||||| Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743 >seq2228 Length=283306 Score = 100 bits (110), Expect = 4e-16 Identities = 127/174 (73%), Gaps = 3/174 (2%) Strand=Plus/Minus Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235 ||| ||||| || ||||| |||||||||||||| || |||||||| || | ||| || || Sbjct 201574 AATCAATTCATTCGAAAAAGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAAT 201515 Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295 | |||||||| ||| ||||| || ||||| ||||| ||||| || || | | Sbjct 201514 AGAAGCGAAAGAGCCACTGAAGAAGATACCTTCAACGGCTGCAAAGGCAACCAGGCGTTG 201455 Query 48296 TCCGTAACTGGCTTCGTTG---TGTATCCACCGTTGTGCCCAATCAGCCTTCTT 48346 || | ||| ||| ||| || ||||| || ||||||||||||||||| Sbjct 201454 GGCGAAGGTGGATTCCTTGTCTTGGATCCATCGAATGGCCCAATCAGCCTTCTT 201401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694626677020640