Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015-
11-03] 4,851 sequences; 27,454,949 total letters
Query= NC_031033.1
Length=217124
Score E
Sequences producing significant alignments: (Bits) Value
seq3934 275 9e-69
seq2228 100 4e-16
>seq3934
Length=413549
Score = 275 bits (304), Expect = 9e-69
Identities = 608/904 (67%), Gaps = 22/904 (2%)
Strand=Plus/Plus
Query 77925 TCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGAC 77984
|| |||||||| || |||| ||| | ||||| | ||| ||||| || | ||| | |
Sbjct 408745 TCGAATTCATCACCGTAAACGTCAGCTAATCCTGACGCTTCGTTTGGACAAAACAAGGTC 408804
Query 77985 CAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAAT 78044
|| || || | | || ||| || ||||| || ||||| || |||| ||||||| ||
Sbjct 408805 CAATCGCCGTTCTTCTCAACCCGCTTCATGAACAGATCGGGGGTCCAAAGAGCAAGGAAG 408864
Query 78045 AGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTA---AGATCGAGAAACTCC 78101
||||| |||| ||| ||| || ||||| | |||||| ||||| | ||||||
Sbjct 408865 AGATCACGGGCTCTTACTTCCTCCTTTCCG---TGGTTTTTACGGAGATCTAAAAACTCG 408921
Query 78102 ATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTATTACCT 78161
| ||||| || ||||| ||||| ||||| || || | | ||||| ||||| || ||
Sbjct 408922 AAGATATCGGAGTGCCAAGGTTCAAGATAAATGGCAAAGGCGCCAGGCCGTTTGTTGCCA 408981
Query 78162 CCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTA 78221
|| || || | ||||| || || || ||| | || | | ||| || | || ||||||
Sbjct 408982 CCTTGGTCGACATATCGAGCTGTATTGTTAAAGACACGGAGCATGGGGACGATTCCGTTA 409041
Query 78222 GATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGATATC 78281
|| | || |||||||| | ||| || ||| | ||||||||| | |||||||
Sbjct 409042 GAGGAGCCGTTTGTTCCTGCAATGTAGGAGCCAGTCGCGCGAATACGA----TGGATATT 409097
Query 78282 ----CCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337
|| || || || || |||| || || |||||||| || | |||||||||||
Sbjct 409098 AAGACCGATACCGCCAGCTGTCTTGGAAATCAGAGCGCAGGTCTTTAGAGTATCGTAGAT 409157
Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGAAC 78397
||| || || || || ||| |||| | || ||||||||| | ||| || | ||
Sbjct 409158 ACCATCGATGCTATCTTCCTTCATATCAATGAGAAAACAGGAGGCCATCTGTGGTTGCGG 409217
Query 78398 AGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATT 78457
||||| || || || | || || || ||||| ||||| |||| | ||| | |||||
Sbjct 409218 TGTTCCCGCGTTGAAAAGAGTGGGGGAAGCATGTGTAAAATATTTCTGAGACATCAGATT 409277
Query 78458 GTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAA 78517
|| ||||| || || || ||||| |||||| || ||||| |||||||| |
Sbjct 409278 ATACGTTTCGATCGCCTTCTCAATGTCTTCGCCATGAATGCCAACCGCAACACGCATAAT 409337
Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577
||| || || || | ||| | ||| ||| ||| ||||| ||||| | || ||
Sbjct 409338 CATGTGTTGCGGACGCTCAGCGACCTTGCCATTGATTCGCAACAGATATGACCTCTCTAA 409397
Query 78578 AGTTTTAAAACCAAAATAGTTGTA--TGAAAAGTCTCTCTCGTAAATAATAACAGAATTT 78635
|||||| || || ||||| | || ||||| || | || |||| ||| | |||||
Sbjct 409398 AGTTTTGAATCCGAAATACTGATAGTTGAAA--TCACGATCATAAACAATGGCCGAATTA 409455
Query 78636 AGTTTATCTTTGTATTTGGTAACAATATCCATGACAGTAGTT--GAAATAATAGGAGATC 78693
|||| || | || ||||||| ||| | | | || ||||| ||||| |
Sbjct 409456 AGTTCCTCGGCATGCTTCATAACAAT-TCCGT-AGGTTTTTTGAGAAATCATAGGCGCAG 409513
Query 78694 GTACACCATTTTTAGGATTAACATAGTTAAATAAATCTTCCATTACATCACTAAATAGtt 78753
|| |||||| || |||| |||| | | | || || || || | || |||
Sbjct 409514 GTCGGTTATTTTTCGGGTTAATGTAGTGATAAAGGTCGTCAATGACCGAAGAGAACTGTT 409573
Query 78754 tttttGTTTCCTTGTGTAGATTAGATACAGCTATTCTTGCAGCTAGAATAGCATAATCAG 78813
|||| || | ||||||||| || || || |||||||| || || || |||||||| || |
Sbjct 409574 TTTTGGTCTGCTTGTGTAGGTTGGACACGGCTATTCTGGCTGCAAGGATAGCATAGTCTG 409633
Query 78814 GATG 78817
| ||
Sbjct 409634 GGTG 409637
Score = 91.5 bits (100), Expect = 2e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841
|| || || || |||| || || | ||||||| ||||||||||| ||||| || ||
Sbjct 407541 GTGAATTGGATGGGAGCTGAAGCTGCCATTGTACGGAGATAGTACATCCCAGTCTTCAGG 407600
Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901
|||| ||||||| ||||||||||| || | |||| |||| || | |
Sbjct 407601 CCCAACTTCCATCCCGCAAAATGCATGCTGGTGATTTTGCCCATTGTAGGCTCTTTGAGA 407660
Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961
|| || || | || ||| |||||||||||| || || | ||||| ||||| | ||
Sbjct 407661 TGGATGTTGAGAGATTGAGATTGATCGATGAATGCGCCCCGGTCAGCAGCCATCTGAATG 407720
Query 76962 ATGGTCTTTTGAGGAATTTCCCA 76984
|||||| |||| | ||||||||
Sbjct 407721 ATGGTCCTTTGGGAGATTTCCCA 407743
>seq2228
Length=283306
Score = 100 bits (110), Expect = 4e-16
Identities = 127/174 (73%), Gaps = 3/174 (2%)
Strand=Plus/Minus
Query 48176 AATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATAT 48235
||| ||||| || ||||| |||||||||||||| || |||||||| || | ||| || ||
Sbjct 201574 AATCAATTCATTCGAAAAAGTGAGACCGGGCATAAGGCCACGTTTCTTCAACCAGAAAAT 201515
Query 48236 TGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTC 48295
| |||||||| ||| ||||| || ||||| ||||| ||||| || || | |
Sbjct 201514 AGAAGCGAAAGAGCCACTGAAGAAGATACCTTCAACGGCTGCAAAGGCAACCAGGCGTTG 201455
Query 48296 TCCGTAACTGGCTTCGTTG---TGTATCCACCGTTGTGCCCAATCAGCCTTCTT 48346
|| | ||| ||| ||| || ||||| || |||||||||||||||||
Sbjct 201454 GGCGAAGGTGGATTCCTTGTCTTGGATCCATCGAATGGCCCAATCAGCCTTCTT 201401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 694626677020640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |