Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Byssoonygena_20ceratinophila_20[genbank_20GCA_5F001430925.1_202015- 11-03] 4,851 sequences; 27,454,949 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq3761 132 2e-26 seq3296 100 9e-17 >seq3761 Length=1757 Score = 132 bits (146), Expect = 2e-26 Identities = 175/236 (74%), Gaps = 10/236 (4%) Strand=Plus/Minus Query 40083 CCGAAGGTCCCGATCTG--TG-CGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTG 40139 ||||||||| ||||||| || || ||| | || || |||||| || | |||||| | Sbjct 697 CCGAAGGTCGCGATCTGGCTGACGGCCTCG--CGGCC-GTACTTGTCCTTCACGTACTCG 641 Query 40140 ATCACGTCGCCCCG--TCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGC 40197 || || | |||| | ||| | || |||||||||||| | ||| ||||| ||||||| Sbjct 640 ATGACCCGGTCCCGGTTGGCCTGGCA--GAAGTCGATGTCGAAGTCCGGCATCGACACGC 583 Query 40198 GCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGA 40257 |||| ||||||||||| |||||||| | || || | ||| ||| || ||||| |||| Sbjct 582 GCTCCGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACTGGAGGGGATCGAGGTCGGTGA 523 Query 40258 TGCCGAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACC 40313 | ||| | ||||| |||||||| ||||| | || ||||| || || |||||| Sbjct 522 TCTTGAGCGAATAGGCCACCAGCGATCCGGCGCCTGATCCACGGCCCGGGCCGACC 467 Score = 86.0 bits (94), Expect = 2e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 39203 CTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACC 39262 || ||||| |||||| ||||||||||||||| || ||||| || ||||| || || Sbjct 1622 CTGGGCCATCTCCTCGGCCTTCTTCTTGCCCATCGCCCGGCGCAGCAGGTCCGCGCCGCC 1563 Query 39263 CAGGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAG 39322 ||| |||| || | |||||||| || | || | |||||| |||||||||| | | Sbjct 1562 CAGCGTGTAGCCGCCCAGGATCTGCGCGGTCTGCATCACCTGTTCCTGGTAGACCATGAT 1503 Query 39323 CCCGTAGGTC 39332 ||||||||| Sbjct 1502 TCCGTAGGTC 1493 >seq3296 Length=739 Score = 100 bits (110), Expect = 9e-17 Identities = 213/318 (67%), Gaps = 20/318 (6%) Strand=Plus/Plus Query 3611 CTCCAGCCGGGTGACGAGATCGTCCTCGGCTTCGACGGTGGCAAGACGCATGACGCGACC 3670 || ||||| || ||| |||||| |||| |||||||| |||||||| | |||||||| Sbjct 157 CTTCAGCCCGGCGACACCATCGTCATCGGGTTCGACGGCGGCAAGACAGACGACGCGACA 216 Query 3671 GCCCTGGTCGCGATCCGCGTCCGCGACATGTGCGCGTTCCTCCTCGGTCTCTGGGAGAAG 3730 || | |||| | |||||| |||| | |||| | ||||| ||||||||||| Sbjct 217 GCGATCATCGCTCTTCGCGTCGCCGACCGGCTCGCGCAGCCGCTCGGGATCTGGGAGAAG 276 Query 3731 CCAGACGGACCGCAGGGCGACAACTGGGAGGTGCCTCGCTGGGAG-GTCGACTCCGAG-- 3787 || || || || | ||| | ||||||||||| || ||| | || | |||| Sbjct 277 CCCGAGGGCCCTCTCGGCAAGAACTGGGAGGT----CGACAGGATCGCCGTCGGCGAGCT 332 Query 3788 -GTGCACAACGCCTTCAAGCAGTTCAACGTCCAGGTGTTCTACGCCGACGTTGCCCTGTG 3846 || | |||||||| | || | ||||| | |||| ||||||||| || || Sbjct 333 CGTCGAGCACGCCTTCGGGACGTACGACGTCGTCGGCTTCTTCGCCGACGTCAAGCTCTG 392 Query 3847 GGAGTCGTACATCTCCGAGTGGTCTGAGACCTACGGGGATCAGCTCGCGGTGAAG----- 3901 |||||| |||||| | ||||| |||| |||| || | |||| ||||||| Sbjct 393 GGAGTCCTACATCGACACCTGGTCGGAGAAGTACGCCGACCGGCTCCTGGTGAAGGCGAC 452 Query 3902 -------TCGCCGGTCGG 3912 ||||||||||| Sbjct 453 CCCGAAGTCGCCGGTCGG 470 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160131574989128